RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 ADAM23O75077 832 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 APODP05090 189 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 ITGB3P05106 788 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 SERPINF2P08697 491 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 SCP2P22307 547 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 PTPRDP23468 1912 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 HOXD12P35452 270 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 PNPLA4P41247 253 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 ZNF131P52739 623 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 GTF2BQ00403 316 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 RPL6Q02878 288 aaKnown RBP11.22□□□□□ -0.61
VPS29-208ENST00000550267 CFAP221Q4G0U5 840 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 HSF5Q4G112 596 aaPredicted RBP11.22□□□□□ -0.61
VPS29-208ENST00000550267 ADGRG2Q8IZP9 1017 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 PNPLA1Q8N8W4 532 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 COL26A1Q96A83 441 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 FAM84AQ96KN4 292 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 SLC24A3Q9HC58 644 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 ARHGEF4Q9NR80 690 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 LIMCH1Q9UPQ0 1083 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 MYH11P35749 1972 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 TCHHQ07283 1943 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 AP5Z1O43299 807 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 ATP2C2O75185 946 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 KRT18P05783 430 aaKnown RBP11.21□□□□□ -0.61
VPS29-208ENST00000550267 FTH1P19P0C7X4 201 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 PDE6CP51160 858 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 HMGN5P82970 282 aaKnown RBP11.21□□□□□ -0.61
VPS29-208ENST00000550267 TFAMQ00059 246 aaKnown RBP11.21□□□□□ -0.61
VPS29-208ENST00000550267 ZNF33AQ06730 810 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 RESTQ13127 1097 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 HNRNPDQ14103 355 aaKnown RBP11.21□□□□□ -0.61
VPS29-208ENST00000550267 TRIP6Q15654 476 aaKnown RBP11.21□□□□□ -0.61
VPS29-208ENST00000550267 SLFN12LQ6IEE8 588 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 RHBDF2Q6PJF5 856 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 ADGRF2Q8IZF7 708 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 TMEM86AQ8N2M4 240 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 SVOPQ8N4V2 548 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 C1orf127Q8N9H9 656 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 MDM1Q8TC05 714 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 LRRN4Q8WUT4 740 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 HNRNPLLQ8WVV9 542 aaKnown RBP11.21□□□□□ -0.61
VPS29-208ENST00000550267 ADAMTS14Q8WXS8 1223 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 FUBP3Q96I24 572 aaKnown RBP eCLIP11.21□□□□□ -0.61
VPS29-208ENST00000550267 BBC3Q96PG8 261 aaPredicted RBP11.21□□□□□ -0.61
VPS29-208ENST00000550267 RNF38Q9H0F5 515 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 CCDC86Q9H6F5 360 aaKnown RBP11.21□□□□□ -0.61
VPS29-208ENST00000550267 DNAAF2Q9NVR5 837 aaKnown RBP11.21□□□□□ -0.61
VPS29-208ENST00000550267 SMPD4Q9NXE4 827 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 TRPM5Q9NZQ8 1165 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 SNX9Q9Y5X1 595 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 CPQQ9Y646 472 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 STYXL1Q9Y6J8 313 aa11.21□□□□□ -0.61
VPS29-208ENST00000550267 LAMA5O15230 3695 aa11.21□□□□□ -0.62
VPS29-208ENST00000550267 NBEAQ8NFP9 2946 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 PCDH15Q96QU1 1955 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 HELZP42694 1942 aaKnown RBP11.2□□□□□ -0.62
VPS29-208ENST00000550267 A0A0A0MRY4 1105 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 IL18RAPO95256 599 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 ADH5P11766 374 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 GABRG2P18507 467 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 PLCG1P19174 1290 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 ADSSP30520 456 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 EIF2DP41214 584 aaKnown RBP11.2□□□□□ -0.62
VPS29-208ENST00000550267 GRIA2P42262 883 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 CTSOP43234 321 aaPredicted RBP11.2□□□□□ -0.62
VPS29-208ENST00000550267 MAGEA11P43364 429 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 TNFRSF4P43489 277 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 PSMC1P62191 440 aaKnown RBP11.2□□□□□ -0.62
VPS29-208ENST00000550267 SLC7A9P82251 487 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 POU5F1Q01860 360 aaKnown RBP11.2□□□□□ -0.62
VPS29-208ENST00000550267 MCM6Q14566 821 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 SLC36A4Q6YBV0 504 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 CCNI2Q6ZMN8 369 aaPredicted RBP11.2□□□□□ -0.62
VPS29-208ENST00000550267 DENND5BQ6ZUT9 1274 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 SV2AQ7L0J3 742 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 NT5DC4Q86YG4 428 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 SLC41A1Q8IVJ1 513 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 VWA5B2Q8N398 1253 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 LRRC52Q8N7C0 313 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 ZSWIM2Q8NEG5 633 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 POMGNT1Q8WZA1 660 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 MYLPFQ96A32 169 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 SPATA17Q96L03 361 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 BLOC1S4Q9NUP1 217 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 CALCOCO1Q9P1Z2 691 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 CFAP97Q9P2B7 532 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 MAGEC2Q9UBF1 373 aaPredicted RBP11.2□□□□□ -0.62
VPS29-208ENST00000550267 PCDHB9Q9Y5E1 797 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 DMXL2Q8TDJ6 3036 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 ITPR1Q14643 2758 aa11.2□□□□□ -0.62
VPS29-208ENST00000550267 ADAMTS9Q9P2N4 1935 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 IGHV1OR15-9A0A0B4J2B8 117 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 ZNF840PA6NDX5 716 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 SLC9A3R1O14745 358 aaPredicted RBP11.19□□□□□ -0.62
VPS29-208ENST00000550267 GABRDO14764 452 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 TBCAO75347 108 aaKnown RBP11.19□□□□□ -0.62
VPS29-208ENST00000550267 OLFM2O95897 454 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 ABL1P00519 1130 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 SYPP08247 313 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms