RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 RPL21P46778 160 aaKnown RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 AP2B1P63010 937 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 PRAMEP78395 509 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 FOXD4Q12950 439 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 RPS26P11Q5JNZ5 115 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 WIPI1Q5MNZ9 446 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 RINT1Q6NUQ1 792 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 IYDQ6PHW0 289 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 NLRP9Q7RTR0 991 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 PRUNE1Q86TP1 453 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 RBBP8NLQ8NC74 664 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 HSPH1Q92598 858 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 ZNF668Q96K58 619 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 IKZF4Q9H2S9 585 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 TMEM165Q9HC07 324 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 NEU2Q9Y3R4 380 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 XPO1O14980 1071 aaKnown RBP5.71□□□□□ -1.49
LIMA1-203ENST00000547825 SLC16A4O15374 487 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 SNX3O60493 162 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 STAM2O75886 525 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 PON1P27169 355 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 COILP38432 576 aaPredicted RBP5.71□□□□□ -1.49
LIMA1-203ENST00000547825 VHLP40337 213 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 MAGEA4P43358 317 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 TRAF1Q13077 416 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 ANO4Q32M45 955 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 ZCWPW2Q504Y3 356 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 RNF220Q5VTB9 566 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 TATDN1Q6P1N9 297 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 DNAJC24Q6P3W2 148 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 TMEM270Q6UE05 265 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 NUDCD3Q8IVD9 361 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 ARID3BQ8IVW6 561 aaPredicted RBP5.71□□□□□ -1.49
LIMA1-203ENST00000547825 ZFPM1Q8IX07 1006 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 GPBAR1Q8TDU6 330 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 KRT35Q92764 455 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 PI4K2AQ9BTU6 479 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 APOL6Q9BWW8 343 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 TSSK1BQ9BXA7 367 aa5.71□□□□□ -1.49
LIMA1-203ENST00000547825 LAMA2P24043 3122 aaKnown RBP5.71□□□□□ -1.49
LIMA1-203ENST00000547825 AKAP3O75969 853 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 KRT10P13645 584 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 CREB1P16220 341 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 FGFR3P22607 806 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 GRM4Q14833 912 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 ASPRV1Q53RT3 343 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 ARSHQ5FYA8 562 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 PPP6R3Q5H9R7 873 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-203ENST00000547825 OVOS1Q6IE37 1185 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 C3orf62Q6ZUJ4 267 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 RAPH1Q70E73 1250 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 ZNF572Q7Z3I7 529 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-203ENST00000547825 ZBTB46Q86UZ6 589 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 ADGRF4Q8IZF3 695 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 NME8Q8N427 588 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 TTC8Q8TAM2 541 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 SLC20A1Q8WUM9 679 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 SLC5A5Q92911 643 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 GLT8D2Q9H1C3 349 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 SH3GLB2Q9NR46 395 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 SUCLA2Q9P2R7 463 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-203ENST00000547825 NAALADL1Q9UQQ1 740 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 CSADQ9Y600 493 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 SNCAIPQ9Y6H5 919 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 MKI67P46013 3256 aaKnown RBP5.71□□□□□ -1.5
LIMA1-203ENST00000547825 PIK3R2O00459 728 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 ENTPD3O75355 529 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 GPC4O75487 556 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 DGKIO75912 1065 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 ZWINTO95229 277 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 GH1P01241 217 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 APOEP02649 317 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 RALAP11233 206 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 FMO5P49326 533 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 JAG1P78504 1218 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 IL1RL1Q01638 556 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 ITIH4Q14624 930 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 HADHQ16836 314 aaKnown RBP5.71□□□□□ -1.5
LIMA1-203ENST00000547825 KCTD21Q4G0X4 260 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 ERMARDQ5T6L9 678 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 MAP3K21Q5TCX8 1036 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 LRFN4Q6PJG9 635 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 IZUMO2Q6UXV1 221 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 WDR75Q8IWA0 830 aaKnown RBP5.71□□□□□ -1.5
LIMA1-203ENST00000547825 KCTD6Q8NC69 237 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 ATL2Q8NHH9 583 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.71□□□□□ -1.52e-6■■■■■ 29
LIMA1-203ENST00000547825 RUBCNQ92622 972 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 GRAMD1AQ96CP6 724 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 SLC9A7Q96T83 725 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 ZFYVE1Q9HBF4 777 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 KLF15Q9UIH9 416 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 APOBEC2Q9Y235 224 aaKnown RBP5.71□□□□□ -1.5
LIMA1-203ENST00000547825 NR2E1Q9Y466 385 aa5.71□□□□□ -1.5
LIMA1-203ENST00000547825 H0YGN5 161 aa5.7□□□□□ -1.5
LIMA1-203ENST00000547825 GFRA2O00451 464 aa5.7□□□□□ -1.5
LIMA1-203ENST00000547825 POLR2MP0CAP2 368 aa5.7□□□□□ -1.5
LIMA1-203ENST00000547825 HSPA8P11142 646 aaKnown RBP5.7□□□□□ -1.5
LIMA1-203ENST00000547825 MYCLP1P12525 358 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-203ENST00000547825 BMP3P12645 472 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms