RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 PSMC4P43686 418 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 EFNA5P52803 228 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 TRPC3Q13507 836 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 ZNF699Q32M78 642 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 KCNT1Q5JUK3 1230 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 FOXB2Q5VYV0 432 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 C4orf22Q6V702 233 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 RIPOR1Q6ZS17 1223 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 XYLT1Q86Y38 959 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 GBP5Q96PP8 586 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 PANX3Q96QZ0 392 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 ECSITQ9BQ95 431 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 CCDC106Q9BWC9 280 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 POPDC2Q9HBU9 364 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 ZNF302Q9NR11 478 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 ZDHHC7Q9NXF8 308 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 ZNF219Q9P2Y4 722 aaPredicted RBP9.1□□□□□ -0.95
TDP1-204ENST00000545686 HBS1LQ9Y450 684 aaKnown RBP9.1□□□□□ -0.95
TDP1-204ENST00000545686 TOM1L1O75674 476 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 RFPL1O75677 317 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 EDN1P05305 212 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 LYNP07948 512 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 MIPP30301 263 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 GABRB2P47870 512 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 SERPINB9P50453 376 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 SH3BGRP55822 239 aaPredicted RBP9.1□□□□□ -0.95
TDP1-204ENST00000545686 MRPS5P82675 430 aaKnown RBP9.1□□□□□ -0.95
TDP1-204ENST00000545686 DYNC1I2Q13409 638 aaKnown RBP9.1□□□□□ -0.95
TDP1-204ENST00000545686 HNRNPDQ14103 355 aaKnown RBP9.1□□□□□ -0.95
TDP1-204ENST00000545686 STXBP5Q5T5C0 1151 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 DARS2Q6PI48 645 aaKnown RBP9.1□□□□□ -0.95
TDP1-204ENST00000545686 ARID3BQ8IVW6 561 aaPredicted RBP9.1□□□□□ -0.95
TDP1-204ENST00000545686 KIAA0319LQ8IZA0 1049 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.1□□□□□ -0.95
TDP1-204ENST00000545686 FAF2Q96CS3 445 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 MCRS1Q96EZ8 462 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 ZBED3Q96IU2 234 aaPredicted RBP9.1□□□□□ -0.95
TDP1-204ENST00000545686 MRPL4Q9BYD3 311 aaKnown RBP9.1□□□□□ -0.95
TDP1-204ENST00000545686 RPAP3Q9H6T3 665 aaPredicted RBP9.1□□□□□ -0.95
TDP1-204ENST00000545686 ASNSD1Q9NWL6 643 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 USP18Q9UMW8 372 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.1□□□□□ -0.95
TDP1-204ENST00000545686 TRIP11Q15643 1979 aa9.1□□□□□ -0.95
TDP1-204ENST00000545686 A0A0G2JMZ2 1700 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 LRRC37A2A6NM11 1700 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 C2orf71A6NGG8 1288 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 OGTO15294 1046 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 RTN3O95197 1032 aaPredicted RBP9.09□□□□□ -0.95
TDP1-204ENST00000545686 OSBPP22059 807 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 CNTFP26441 200 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 CRHR1P34998 444 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 RPL26P61254 145 aaKnown RBP9.09□□□□□ -0.95
TDP1-204ENST00000545686 XIAPP98170 497 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 CAPSQ13938 189 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 CHI3L2Q15782 390 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 HSF5Q4G112 596 aaPredicted RBP9.09□□□□□ -0.95
TDP1-204ENST00000545686 ZNF394Q53GI3 561 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 IZUMO2Q6UXV1 221 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 CDHR3Q6ZTQ4 885 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 ILDR2Q71H61 639 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 PRPF39Q86UA1 669 aaKnown RBP9.09□□□□□ -0.95
TDP1-204ENST00000545686 NUDCD3Q8IVD9 361 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 PPM1NQ8N819 430 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 MCUQ8NE86 351 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 AGBL3Q8NEM8 1001 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 PPP2R3CQ969Q6 453 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 AZIN2Q96A70 460 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 CFAP36Q96G28 342 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 ACAP3Q96P50 834 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 CALN1Q9BXU9 219 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 PPP1R12CQ9BZL4 782 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 KLC2Q9H0B6 622 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 SDCBP2Q9H190 292 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 XYLT2Q9H1B5 865 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 VCX3BQ9H321 246 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 PIDD1Q9HB75 910 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 ZC3H7BQ9UGR2 993 aaKnown RBP9.09□□□□□ -0.95
TDP1-204ENST00000545686 SLC7A8Q9UHI5 535 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 SOX13Q9UN79 622 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 SLC4A7Q9Y6M7 1214 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 COL4A5P29400 1685 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 APOEP02649 317 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 BPGMP07738 259 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 PIM1P11309 404 aaPredicted RBP9.09□□□□□ -0.95
TDP1-204ENST00000545686 TGM2P21980 687 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 ICAM3P32942 547 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 TNFSF9P41273 254 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 CPA2P48052 419 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 ZNF143P52747 638 aaPredicted RBP9.09□□□□□ -0.95
TDP1-204ENST00000545686 AQP5P55064 265 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 SP4Q02446 784 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 C1orf146Q5VVC0 180 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 TIFABQ6ZNK6 161 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 ACAD11Q709F0 780 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 CTAGE3PQ8IX95 158 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 PHC3Q8NDX5 983 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 REPS2Q8NFH8 660 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 NCSTNQ92542 709 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 HSPH1Q92598 858 aa9.09□□□□□ -0.95
TDP1-204ENST00000545686 JADE3Q92613 823 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms