RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 CCDC33Q8N5R6 958 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 C12orf50Q8NA57 414 aaPredicted RBP8.99□□□□□ -0.97
USP28-215ENST00000545608 KIAA0895Q8NCT3 520 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 SCAMP5Q8TAC9 235 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 ACDQ96AP0 544 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 PAGE5Q96GU1 130 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 SLITRK1Q96PX8 696 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 VRTNQ9H8Y1 702 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 CFAP97Q9P2B7 532 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 PCDHGA5Q9Y5G8 931 aa8.99□□□□□ -0.97
USP28-215ENST00000545608 TPRP12270 2363 aaKnown RBP8.98□□□□□ -0.97
USP28-215ENST00000545608 SLC9A3R1O14745 358 aaPredicted RBP8.98□□□□□ -0.97
USP28-215ENST00000545608 TNFRSF10BO14763 440 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 COCHO43405 550 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 BEST1O76090 585 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 RTN3O95197 1032 aaPredicted RBP8.98□□□□□ -0.97
USP28-215ENST00000545608 SLFN14P0C7P3 912 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 HNRNPLP14866 589 aaKnown RBP eCLIP8.98□□□□□ -0.97
USP28-215ENST00000545608 MPLP40238 635 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 AP3M2P53677 418 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 SLC5A3P53794 718 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 NCOA4Q13772 614 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 NR6A1Q15406 480 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 ZNF699Q32M78 642 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 ZNF667Q5HYK9 610 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 EMC10Q5UCC4 262 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 ATL3Q6DD88 541 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 IL31Q6EBC2 164 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 TCEAL6Q6IPX3 200 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 ADGRD1Q6QNK2 874 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 SCARA5Q6ZMJ2 495 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 ACOT1Q86TX2 421 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 FAM35AQ86V20 835 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 SLC9A9Q8IVB4 645 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 HSCBQ8IWL3 235 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 CEP57L1Q8IYX8 460 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 FUKQ8N0W3 1084 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 KIAA1958Q8N8K9 716 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 ZMIZ2Q8NF64 920 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 ANKK1Q8NFD2 765 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 TSTD1Q8NFU3 115 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 GOLGA5Q8TBA6 731 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 TCEAL3Q969E4 200 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 FBXO32Q969P5 355 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 WBP2Q969T9 261 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 CHAMP1Q96JM3 812 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 PNKPQ96T60 521 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 MED10Q9BTT4 135 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 TPSD1Q9BZJ3 242 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 KCTD10Q9H3F6 313 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 IL37Q9NZH6 218 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 MMP17Q9ULZ9 603 aa8.98□□□□□ -0.97
USP28-215ENST00000545608 ZNF638Q14966 1978 aaKnown RBP8.98□□□□□ -0.97
USP28-215ENST00000545608 ANAPC1Q9H1A4 1944 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 DNAH14Q0VDD8 3507 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 A0A0A0MRY4 1105 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 A0A1B0GVL5 298 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 E2F8A0AVK6 867 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 BCLAF3A2AJT9 711 aaKnown RBP8.97□□□□□ -0.97
USP28-215ENST00000545608 RHOBTB1O94844 696 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 CLSTN1O94985 981 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 CAVIN2O95810 425 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 HSP90AA1P07900 732 aaKnown RBP8.97□□□□□ -0.97
USP28-215ENST00000545608 ZDHHC11BP0C7U3 371 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 CCDC130P13994 396 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 BCKDHBP21953 392 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 GBP1P32455 592 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 PGFP49763 221 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 NDST1P52848 882 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 MRPS21P82921 87 aaKnown RBP8.97□□□□□ -0.97
USP28-215ENST00000545608 LSM11P83369 360 aaKnown RBP eCLIP8.97□□□□□ -0.976e-18■■■■■ 77.1
USP28-215ENST00000545608 CREB5Q02930 508 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 ORC1Q13415 861 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 ELF2Q15723 593 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 CRY1Q16526 586 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 ZACNQ401N2 412 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 USP39Q53GS9 565 aaKnown RBP8.97□□□□□ -0.97
USP28-215ENST00000545608 LY6G5CQ5SRR4 150 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 C1orf220Q5T0J3 134 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 HECTD3Q5T447 861 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 N4BP2L1Q5TBK1 243 aaPredicted RBP8.97□□□□□ -0.97
USP28-215ENST00000545608 STPG1Q5TH74 334 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 SNX30Q5VWJ9 437 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 SPOPLQ6IQ16 392 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 ANO7Q6IWH7 933 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 SV2AQ7L0J3 742 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 RASSF3Q86WH2 238 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 CRYBG2Q8N1P7 616 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 ALLCQ8N6M5 410 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 PDZD8Q8NEN9 1154 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 MDGA1Q8NFP4 955 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 CCDC26Q8TAB7 109 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 EPS8L1Q8TE68 723 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 TMEM174Q8WUU8 243 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 OVCA2Q8WZ82 227 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 TNIP3Q96KP6 325 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 CNOT6LQ96LI5 555 aaKnown RBP8.97□□□□□ -0.97
USP28-215ENST00000545608 HS3ST6Q96QI5 342 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 SMOQ99835 787 aa8.97□□□□□ -0.97
USP28-215ENST00000545608 CCSER2Q9H7U1 834 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms