RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	ZDHHC17	Q8IUH5	632 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	SMRP1	Q8NCR6	262 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	RNF139	Q8WU17	664 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	ING5	Q8WYH8	240 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	OVCA2	Q8WZ82	227 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	IRGQ	Q8WZA9	623 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	ZNF653	Q96CK0	615 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	TRIM11	Q96F44	468 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	PDLIM2	Q96JY6	352 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	NECTIN4	Q96NY8	510 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	SELENOO	Q9BVL4	669 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	LRRC3	Q9BY71	257 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	IL21	Q9HBE4	155 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	WDR6	Q9NNW5	1121 aa	Known RBP	10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	LUC7L	Q9NQ29	371 aa	Known RBP	10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	IL37	Q9NZH6	218 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	WDR35	Q9P2L0	1181 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	MYO1A	Q9UBC5	1043 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	CLUH	O75153	1309 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	ANKRD62	A6NC57	917 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	YJEFN3	A6XGL0	299 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	EIF3CL	B5ME19	914 aa	Known RBP	10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545		E7ENQ6	273 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	NDUFA10	O95299	355 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	LTF	P02788	710 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	MYBL1	P10243	752 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	KRT3	P12035	628 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	RARG	P13631	454 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	FECH	P22830	423 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	RRM1	P23921	792 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	GBP2	P32456	591 aa	Predicted RBP	10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	CCR2	P41597	374 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	GABRB2	P47870	512 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	PSEN1	P49768	467 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	EPHA5	P54756	1037 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	GALC	P54803	685 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	SMAD4	Q13485	552 aa	Known RBP	10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	CBX2	Q14781	532 aa	Predicted RBP	10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	MTF1	Q14872	753 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	SLC5A9	Q2M3M2	681 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	C10orf120	Q5SQS8	335 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	HECTD3	Q5T447	861 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	GPR158	Q5T848	1215 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	TXNDC8	Q6A555	127 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	DCUN1D2	Q6PH85	259 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	RAD9B	Q6WBX8	426 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	MON1B	Q7L1V2	547 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	SCD5	Q86SK9	330 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	TADA2B	Q86TJ2	420 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	MAB21L3	Q8N8X9	362 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	TTC16	Q8NEE8	873 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	OLIG1	Q8TAK6	271 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	ITFG1	Q8TB96	612 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	SHKBP1	Q8TBC3	707 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	EDEM1	Q92611	657 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	MCRS1	Q96EZ8	462 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	VCPIP1	Q96JH7	1222 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	ZNF830	Q96NB3	372 aa	Predicted RBP	10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	EIF3C	Q99613	913 aa	Known RBP	10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	TRIM62	Q9BVG3	475 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	ISCU	Q9H1K1	167 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	NMUR1	Q9HB89	426 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	PRDM6	Q9NQX0	595 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	CNOT8	Q9UFF9	292 aa	Known RBP	10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	NUDT5	Q9UKK9	219 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	FAM50B	Q9Y247	325 aa		10.65	□□□□□ -0.7
CPSF7-221	ENST00000543545	TRAV19	A0A0A6YYK7	116 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	FAM92A	A1XBS5	289 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	GRXCR2	A6NFK2	248 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	ARHGAP6	O43182	974 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	ATMIN	O43313	823 aa	Predicted RBP	10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	MBTPS2	O43462	519 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	HSF2BP	O75031	334 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	NCAM1	P13591	858 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	CEBPB	P17676	345 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	HDC	P19113	662 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	PGF	P49763	221 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	YWHAZ	P63104	245 aa	Known RBP	10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	GPC5	P78333	572 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	KRT83	P78385	493 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	PTP4A2	Q12974	167 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	TAF5	Q15542	800 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	LEXM	Q3ZCV2	418 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	DCAF6	Q58WW2	860 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	PRSS36	Q5K4E3	855 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	C10orf76	Q5T2E6	689 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	PTCRA	Q6ISU1	281 aa	Predicted RBP	10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	OLFML1	Q6UWY5	402 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	HFE2	Q6ZVN8	426 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	KIAA1328	Q86T90	577 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	TMEM150A	Q86TG1	271 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	SCML4	Q8N228	414 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	PPP1R9B	Q96SB3	815 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	THAP2	Q9H0W7	228 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	POMK	Q9H5K3	350 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	TASP1	Q9H6P5	420 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	POPDC2	Q9HBU9	364 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	AVEN	Q9NQS1	362 aa	Predicted RBP	10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	METTL5	Q9NRN9	209 aa	Known RBP	10.64	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms