RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 TRDMT1O14717 391 aaKnown RBP10.28□□□□□ -0.76
SS18-205ENST00000542420 XPO1O14980 1071 aaKnown RBP10.28□□□□□ -0.76
SS18-205ENST00000542420 TM9SF1O15321 606 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 RECQL4O94761 1208 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 ASMTLO95671 621 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 VIMP08670 466 aaKnown RBP10.28□□□□□ -0.76
SS18-205ENST00000542420 ZSCAN5DPP0CG00 497 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 TPSB2P20231 275 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 SKIV2L2P42285 1042 aaKnown RBP10.28□□□□□ -0.76
SS18-205ENST00000542420 ZNF135P52742 658 aaPredicted RBP10.28□□□□□ -0.76
SS18-205ENST00000542420 NKX3-2P78367 333 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 SNX17Q15036 470 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 TPSAB1Q15661 275 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 KIZQ2M2Z5 673 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 SMTNL2Q2TAL5 461 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 RNF43Q68DV7 783 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 TRNP1Q6NT89 227 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 PMF1Q6P1K2 205 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 FAM43BQ6ZT52 329 aaPredicted RBP10.28□□□□□ -0.76
SS18-205ENST00000542420 CYS1Q717R9 158 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 TLK2Q86UE8 772 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 ZBED8Q8IZ13 594 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 HSPH1Q92598 858 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 ZMAT2Q96NC0 199 aaKnown RBP10.28□□□□□ -0.76
SS18-205ENST00000542420 CALN1Q9BXU9 219 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 OSBPL7Q9BZF2 842 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 RABEP2Q9H5N1 569 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 VPS37BQ9H9H4 285 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 RABGEF1Q9UJ41 708 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 ARL2BPQ9Y2Y0 163 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 STARD13Q9Y3M8 1113 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 RAD54BQ9Y620 910 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 DOCK3Q8IZD9 2030 aa10.28□□□□□ -0.76
SS18-205ENST00000542420 CASP8AP2Q9UKL3 1982 aa10.27□□□□□ -0.76
SS18-205ENST00000542420 PATJQ8NI35 1801 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 KPNA7A9QM74 516 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 PAPSS1O43252 624 aaPredicted RBP10.27□□□□□ -0.77
SS18-205ENST00000542420 DAB1O75553 588 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 IFNB1P01574 187 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 ETS1P14921 441 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 ELF1P32519 619 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 RGS2P41220 211 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 SLC8A3P57103 927 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 CDK16Q00536 496 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 TMED2Q15363 201 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 MTFR1Q15390 333 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 SOWAHAQ2M3V2 549 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 KCNT1Q5JUK3 1230 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 UBXN11Q5T124 520 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 RNF187Q5TA31 235 aaPredicted RBP10.27□□□□□ -0.77
SS18-205ENST00000542420 CYP4F22Q6NT55 531 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 DARS2Q6PI48 645 aaKnown RBP10.27□□□□□ -0.77
SS18-205ENST00000542420 UNC45BQ8IWX7 931 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 PLD5Q8N7P1 536 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 ZNF398Q8TD17 642 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 FAM172AQ8WUF8 416 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 CYTH2Q99418 400 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 HNRNPABQ99729 332 aaKnown RBP10.27□□□□□ -0.77
SS18-205ENST00000542420 FAM118BQ9BPY3 351 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 KLC2Q9H0B6 622 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 AP5M1Q9H0R1 490 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 SNX25Q9H3E2 840 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 TRABDQ9H4I3 376 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 USP29Q9HBJ7 922 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 KCNK9Q9NPC2 374 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 CHST12Q9NRB3 414 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 SLC38A7Q9NVC3 462 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 PRKAG3Q9UGI9 489 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 PCSK1NQ9UHG2 260 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 XPO7Q9UIA9 1087 aaKnown RBP10.27□□□□□ -0.77
SS18-205ENST00000542420 ZNF180Q9UJW8 692 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 SLC12A4Q9UP95 1085 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 CLEC11AQ9Y240 323 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 SMIM28A0A1B0GU29 152 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 C17orf102A2RUQ5 167 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 ANKRD33BA6NCL7 494 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 A8MXQ7 604 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 DYNC1LI2O43237 492 aaPredicted RBP10.27□□□□□ -0.77
SS18-205ENST00000542420 GCATO75600 419 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 IL1BP01584 269 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 GBP2P32456 591 aaPredicted RBP10.27□□□□□ -0.77
SS18-205ENST00000542420 GDF10P55107 478 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 BCAR1P56945 870 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 GPX6P59796 221 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 PDK4Q16654 411 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 TRPM8Q7Z2W7 1104 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 BNIPLQ7Z465 357 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 ACOT1Q86TX2 421 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 SRRM1Q8IYB3 904 aaKnown RBP10.27□□□□□ -0.77
SS18-205ENST00000542420 CYP4X1Q8N118 509 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 TMEM86AQ8N2M4 240 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 APPL2Q8NEU8 664 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 KBTBD7Q8WVZ9 684 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 SNRNP25Q9BV90 132 aaKnown RBP10.27□□□□□ -0.77
SS18-205ENST00000542420 EIF2AQ9BY44 585 aaKnown RBP10.27□□□□□ -0.77
SS18-205ENST00000542420 RRN3Q9NYV6 651 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 CTNNAL1Q9UBT7 734 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 SH3BP1Q9Y3L3 701 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 CAPN7Q9Y6W3 813 aa10.27□□□□□ -0.77
SS18-205ENST00000542420 IQANK1A0A1B0GTG1 560 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms