RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 GPR15P49685 360 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 MXI1P50539 228 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 ATXN3P54252 364 aaPredicted RBP9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 NR1H3Q13133 447 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 BIRC3Q13489 604 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 TRPC3Q13507 836 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 NCOA4Q13772 614 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 SGSM1Q2NKQ1 1148 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 ANO6Q4KMQ2 910 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 TRIM61Q5EBN2 209 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 DCAF17Q5H9S7 520 aaPredicted RBP9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 TCERG1LQ5VWI1 586 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 SCARA3Q6AZY7 606 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 LIMS2Q7Z4I7 341 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 C11orf74Q86VG3 221 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 TMEM86AQ8N2M4 240 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 CCDC33Q8N5R6 958 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 RIN3Q8TB24 985 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 SPPL2BQ8TCT7 592 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 RLN3Q8WXF3 142 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 TAF4BQ92750 862 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 FAXDC2Q96IV6 333 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 CNOT6LQ96LI5 555 aaKnown RBP9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 PI4K2AQ9BTU6 479 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 KLK13Q9UKR3 277 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 DSEQ9UL01 958 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 NFE2L3Q9Y4A8 694 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 PCDHB5Q9Y5E4 795 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 ATXN2Q99700 1313 aaKnown RBP9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 ANAPC1Q9H1A4 1944 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 SMTNL1A8MU46 457 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 ASS1P00966 412 aaKnown RBP9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 HLA-DRAP01903 254 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 CSH1P0DML2 217 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 CSH2P0DML3 217 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 EEF1GP26641 437 aaKnown RBP9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 RDXP35241 583 aaKnown RBP9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 PIK3CAP42336 1068 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 FMO5P49326 533 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 ZNF165P49910 485 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 MYL6P60660 151 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 SIM1P81133 766 aaPredicted RBP9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 KCNH2Q12809 1159 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 LMAN2Q12907 356 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 NCAPHQ15003 741 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 ZNF699Q32M78 642 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 CBWD6Q4V339 395 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 CBWD3Q5JTY5 395 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 CBWD5Q5RIA9 395 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 CDKAL1Q5VV42 579 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 WSCD1Q658N2 575 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 C19orf48Q6RUI8 117 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 TMEM150AQ86TG1 271 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 LRRTM3Q86VH5 581 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 MON1AQ86VX9 555 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 TMEFF1Q8IYR6 380 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 DCP1BQ8IZD4 617 aaKnown RBP9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 PGBD3Q8N328 593 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 TOP6BLQ8N6T0 577 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 FBXL13Q8NEE6 735 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 MDGA1Q8NFP4 955 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 TAS1R2Q8TE23 839 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 C2orf15Q8WU43 125 aaKnown RBP9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 OSCP1Q8WVF1 389 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 EZH1Q92800 747 aaPredicted RBP9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 ATP2A3Q93084 1043 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 CYP2S1Q96SQ9 504 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 GTPBP2Q9BX10 602 aaKnown RBP9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 FSCN3Q9NQT6 498 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 SAMSN1Q9NSI8 373 aaKnown RBP9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 RAB20Q9NX57 234 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 BCCIPQ9P287 314 aaKnown RBP eCLIP9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 MAGEC2Q9UBF1 373 aaPredicted RBP9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 NEUROG3Q9Y4Z2 214 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 SNX9Q9Y5X1 595 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 CHD6Q8TD26 2715 aa9.24□□□□□ -0.93
CLSTN3-212ENST00000541770 FRYQ5TBA9 3013 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 TRAV19A0A0A6YYK7 116 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 ANTXRLA6NF34 631 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 KCNJ18B7U540 433 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 GABRDO14764 452 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 HUS1O60921 280 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 TACC1O75410 805 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 ALDH1A2O94788 518 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 AFPP02771 609 aaKnown RBP9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 CFIP05156 583 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 USP17L7P0C7H9 530 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 P4HA1P13674 534 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 HMGA1P17096 107 aaKnown RBP9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 ENGP17813 658 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 MTIF2P46199 727 aaKnown RBP9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 TNNC1P63316 161 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 MYL7Q01449 175 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 TSPY1Q01534 308 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 CETN1Q12798 172 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 KCNJ12Q14500 433 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 MAN2A1Q16706 1144 aa9.23□□□□□ -0.93
CLSTN3-212ENST00000541770 DDR2Q16832 855 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms