RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	TSR2	Q969E8	191 aa	Known RBP	4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	HS6ST2	Q96MM7	605 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	APOL5	Q9BWW9	433 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	ZNF287	Q9HBT7	754 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	TBC1D23	Q9NUY8	699 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	TCEAL9	Q9UHQ7	104 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	ASAP1	Q9ULH1	1129 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	PCDHGB6	Q9Y5F9	930 aa		4.74	□□□□□ -1.65
PRKDC-210	ENST00000541488	CYP2D7	A0A087X1C5	515 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	FCHO1	O14526	889 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	DSCR3	O14972	297 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	MOSPD3	O75425	235 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	BCAR3	O75815	825 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	MT-CO3	P00414	261 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	CHRM5	P08912	532 aa	Predicted RBP	4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	APEH	P13798	732 aa	Known RBP	4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	TPH1	P17752	444 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	ATP5F1	P24539	256 aa	Predicted RBP	4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	TIRAP	P58753	221 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	DEUP1	Q05D60	604 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	MTHFD1L	Q6UB35	978 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	SFTPA1	Q8IWL2	248 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	TCEAL8	Q8IYN2	117 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	METTL25	Q8N6Q8	603 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	NANOGP1	Q8N7R0	232 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	OSR1	Q8TAX0	266 aa	Predicted RBP	4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	CTHRC1	Q96CG8	243 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	NMD3	Q96D46	503 aa	Known RBP	4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	RSPRY1	Q96DX4	576 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	WDYHV1	Q96HA8	205 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	FYTTD1	Q96QD9	318 aa	Known RBP	4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	FAM118B	Q9BPY3	351 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	KRTAP4-4	Q9BYR3	166 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	TRIM5	Q9C035	493 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	CHST8	Q9H2A9	424 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	XPNPEP3	Q9NQH7	507 aa		4.73	□□□□□ -1.65
PRKDC-210	ENST00000541488	FRMPD2	Q68DX3	1309 aa	Predicted RBP	4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	TPP1	O14773	563 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	U2AF1L5	P0DN76	240 aa	Predicted RBP	4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	IL1R1	P14778	569 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	ACVR2A	P27037	513 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	HOXD9	P28356	352 aa	Predicted RBP	4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	CPT1A	P50416	773 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	GATM	P50440	423 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	CACNB3	P54284	484 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	U2AF1	Q01081	240 aa	Known RBP eCLIP	4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	NPY5R	Q15761	445 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	ZNF750	Q32MQ0	723 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	ZNF260	Q3ZCT1	412 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	SHC4	Q6S5L8	630 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	CLEC9A	Q6UXN8	241 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	DCDC5	Q6ZRR9	648 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	UNC13D	Q70J99	1090 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	C14orf80	Q86SX3	495 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	RAB11FIP4	Q86YS3	637 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	MYO1H	Q8N1T3	1032 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	SPATA3	Q8NHX4	192 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	LRRC27	Q9C0I9	530 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	USP29	Q9HBJ7	922 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	SNX15	Q9NRS6	342 aa		4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	TUBA8	Q9NY65	449 aa	Predicted RBP	4.72	□□□□□ -1.65
PRKDC-210	ENST00000541488	ISM1	B1AKI9	464 aa		4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488		E5RJQ4	531 aa		4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	CCP110	O43303	1012 aa		4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	CA12	O43570	354 aa		4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	TSPAN6	O43657	245 aa		4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	MGEA5	O60502	916 aa		4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	RNF8	O76064	485 aa		4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	PARP1	P09874	1014 aa	Known RBP	4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	TXN	P10599	105 aa	Known RBP	4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	MYF5	P13349	255 aa		4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	PEX2	P28328	305 aa		4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	MCM5	P33992	734 aa		4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	CARS	P49589	748 aa	Known RBP	4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	ZNF91	Q05481	1191 aa		4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	SEC23B	Q15437	767 aa		4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	TRIP6	Q15654	476 aa	Known RBP	4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	CC2D1B	Q5T0F9	858 aa	Known RBP	4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	PXDC1	Q5TGL8	231 aa		4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	RRAGB	Q5VZM2	374 aa		4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	NXN	Q6DKJ4	435 aa		4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	DARS2	Q6PI48	645 aa	Known RBP	4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	WDR75	Q8IWA0	830 aa	Known RBP	4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	ZC3H10	Q96K80	434 aa	Known RBP	4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	RIMKLB	Q9ULI2	386 aa		4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	AFG3L2	Q9Y4W6	797 aa		4.71	□□□□□ -1.66
PRKDC-210	ENST00000541488	PLCD1	P51178	756 aa		4.7	□□□□□ -1.66
PRKDC-210	ENST00000541488	GHRHR	Q02643	423 aa		4.7	□□□□□ -1.66
PRKDC-210	ENST00000541488	KCNB1	Q14721	858 aa		4.7	□□□□□ -1.66
PRKDC-210	ENST00000541488	MFSD13A	Q14CX5	517 aa		4.7	□□□□□ -1.66
PRKDC-210	ENST00000541488	LARS2	Q15031	903 aa	Known RBP	4.7	□□□□□ -1.66
PRKDC-210	ENST00000541488	POLD3	Q15054	466 aa	Predicted RBP	4.7	□□□□□ -1.66
PRKDC-210	ENST00000541488	ZNF813	Q6ZN06	617 aa		4.7	□□□□□ -1.66
PRKDC-210	ENST00000541488	YAF2	Q8IY57	180 aa		4.7	□□□□□ -1.66
PRKDC-210	ENST00000541488	NRAC	Q8N912	160 aa		4.7	□□□□□ -1.66
PRKDC-210	ENST00000541488	SMCR8	Q8TEV9	937 aa	Predicted RBP	4.7	□□□□□ -1.66
PRKDC-210	ENST00000541488	PNISR	Q8TF01	805 aa	Known RBP	4.7	□□□□□ -1.66
PRKDC-210	ENST00000541488	MAP4K1	Q92918	833 aa		4.7	□□□□□ -1.66
PRKDC-210	ENST00000541488	APIP	Q96GX9	242 aa		4.7	□□□□□ -1.66

Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms