RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 PCED1BQ96HM7 432 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 RBM15Q96T37 977 aaKnown RBP eCLIP15.17■□□□□ 0.02
CLIP1-216ENST00000541410 DUSP16Q9BY84 665 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 DNALI1O14645 258 aaPredicted RBP15.16■□□□□ 0.02
CLIP1-216ENST00000541410 GABRDO14764 452 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 NPR3P17342 541 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 UPP1Q16831 310 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 DCAF6Q58WW2 860 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 KDM7AQ6ZMT4 941 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 GPRIN1Q7Z2K8 1008 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 FAM131BQ86XD5 332 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 DEFB106AQ8N104 65 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 STK32AQ8WU08 396 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 HNRNPABQ99729 332 aaKnown RBP15.16■□□□□ 0.02
CLIP1-216ENST00000541410 SYT15Q9BQS2 421 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 DHX35Q9H5Z1 703 aaKnown RBP15.16■□□□□ 0.02
CLIP1-216ENST00000541410 PCDH18Q9HCL0 1135 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 NINJ2Q9NZG7 142 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 DRG1Q9Y295 367 aaKnown RBP15.16■□□□□ 0.02
CLIP1-216ENST00000541410 MYO18AQ92614 2054 aaKnown RBP15.16■□□□□ 0.02
CLIP1-216ENST00000541410 APOC4-APOC2K7ER74 178 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 APOC2P02655 101 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 EIF3BP55884 814 aaKnown RBP15.16■□□□□ 0.02
CLIP1-216ENST00000541410 NKX3-2P78367 333 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 ZSCAN26Q16670 478 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 ANKRD22Q5VYY1 191 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 SMYD5Q6GMV2 418 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 SLC26A9Q7LBE3 791 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 MDM1Q8TC05 714 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 ADAM32Q8TC27 787 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 SAYSD1Q9NPB0 183 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 TPX2Q9ULW0 747 aaKnown RBP15.16■□□□□ 0.02
CLIP1-216ENST00000541410 GIT1Q9Y2X7 761 aa15.16■□□□□ 0.02
CLIP1-216ENST00000541410 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.16■□□□□ 0.02
CLIP1-216ENST00000541410 A0A0U1RQF3 1178 aa15.15■□□□□ 0.02
CLIP1-216ENST00000541410 DPYSL4O14531 572 aa15.15■□□□□ 0.02
CLIP1-216ENST00000541410 XPO1O14980 1071 aaKnown RBP15.15■□□□□ 0.02
CLIP1-216ENST00000541410 ENDOD1O94919 500 aa15.15■□□□□ 0.02
CLIP1-216ENST00000541410 ADCY1Q08828 1119 aa15.15■□□□□ 0.02
CLIP1-216ENST00000541410 TRIM71Q2Q1W2 868 aaKnown RBP15.15■□□□□ 0.02
CLIP1-216ENST00000541410 SYPL2Q5VXT5 272 aa15.15■□□□□ 0.02
CLIP1-216ENST00000541410 DARS2Q6PI48 645 aaKnown RBP15.15■□□□□ 0.02
CLIP1-216ENST00000541410 PCDH19Q8TAB3 1148 aa15.15■□□□□ 0.02
CLIP1-216ENST00000541410 P3H4Q92791 437 aa15.15■□□□□ 0.02
CLIP1-216ENST00000541410 RNF157Q96PX1 679 aa15.15■□□□□ 0.02
CLIP1-216ENST00000541410 TSPAN18Q96SJ8 248 aa15.15■□□□□ 0.02
CLIP1-216ENST00000541410 LRRC4Q9HBW1 653 aa15.15■□□□□ 0.02
CLIP1-216ENST00000541410 MFHAS1Q9Y4C4 1052 aa15.15■□□□□ 0.02
CLIP1-216ENST00000541410 TCRBV7S3A2A0A539 114 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 H7C0C1 242 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 NRP1O14786 923 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 RASGRF2O14827 1237 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 MCF2LO15068 1137 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 RGS16O15492 202 aaPredicted RBP15.14■□□□□ 0.01
CLIP1-216ENST00000541410 SHOX2O60902 331 aaPredicted RBP15.14■□□□□ 0.01
CLIP1-216ENST00000541410 AP1G2O75843 785 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 TOMM70O94826 608 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 TTC4O95801 387 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 CKBP12277 381 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 CST5P28325 142 aaPredicted RBP15.14■□□□□ 0.01
CLIP1-216ENST00000541410 RPL22P35268 128 aaKnown RBP15.14■□□□□ 0.01
CLIP1-216ENST00000541410 ATP5OP48047 213 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 CTCFP49711 727 aaPredicted RBP15.14■□□□□ 0.01
CLIP1-216ENST00000541410 TKTL1P51854 596 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 HNRNPH2P55795 449 aaKnown RBP15.14■□□□□ 0.01
CLIP1-216ENST00000541410 SKOR1P84550 965 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 MBTPS1Q14703 1052 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 ANKRD20A8PQ5CZ79 823 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 SPDYCQ5MJ68 293 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 MAP3K21Q5TCX8 1036 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 TRMT10CQ7L0Y3 403 aaKnown RBP15.14■□□□□ 0.01
CLIP1-216ENST00000541410 RPAINQ86UA6 219 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 HOOK3Q86VS8 718 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 PQLC3Q8N755 202 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 GLT1D1Q96MS3 346 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 TMEM209Q96SK2 561 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 TBK1Q9UHD2 729 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 EFR3BQ9Y2G0 817 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 NR2E3Q9Y5X4 410 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 B4GALT3O60512 393 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 INHAP05111 366 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 SULT1E1P49888 294 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 SNX16P57768 344 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 NME3Q13232 169 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 PTK7Q13308 1070 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 DSC3Q14574 896 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 BOLA3Q53S33 107 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 RNASEH2BQ5TBB1 312 aaKnown RBP15.14■□□□□ 0.01
CLIP1-216ENST00000541410 MRPL10Q7Z7H8 261 aaKnown RBP15.14■□□□□ 0.01
CLIP1-216ENST00000541410 RTN4RL1Q86UN2 441 aaPredicted RBP15.14■□□□□ 0.01
CLIP1-216ENST00000541410 ZDHHC17Q8IUH5 632 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 PLD5Q8N7P1 536 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 TTC13Q8NBP0 860 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 HSFY1Q96LI6 401 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 SMOQ99835 787 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 PCDH9Q9HC56 1237 aa15.14■□□□□ 0.01
CLIP1-216ENST00000541410 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.14■□□□□ 0.01
CLIP1-216ENST00000541410 LAMA2P24043 3122 aaKnown RBP15.14■□□□□ 0.01
CLIP1-216ENST00000541410 PIAS1O75925 651 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 FAM200BP0CF97 657 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms