RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 MAK16Q9BXY0 300 aaKnown RBP17.92■□□□□ 0.46
SPIDR-227ENST00000541342 CYLDQ9NQC7 956 aa17.92■□□□□ 0.46
SPIDR-227ENST00000541342 GTF2IRD1Q9UHL9 959 aa17.92■□□□□ 0.46
SPIDR-227ENST00000541342 CASP8AP2Q9UKL3 1982 aa17.92■□□□□ 0.46
SPIDR-227ENST00000541342 MICAL2O94851 1124 aa17.92■□□□□ 0.46
SPIDR-227ENST00000541342 GNAZP19086 355 aa17.92■□□□□ 0.46
SPIDR-227ENST00000541342 ATP11AP98196 1134 aa17.92■□□□□ 0.46
SPIDR-227ENST00000541342 GAD2Q05329 585 aa17.92■□□□□ 0.46
SPIDR-227ENST00000541342 GPS1Q13098 491 aa17.92■□□□□ 0.46
SPIDR-227ENST00000541342 DRICH1Q6PGQ1 229 aaPredicted RBP17.92■□□□□ 0.46
SPIDR-227ENST00000541342 ACSF2Q96CM8 615 aaPredicted RBP17.92■□□□□ 0.46
SPIDR-227ENST00000541342 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.92■□□□□ 0.467e-6■■■■■ 27.7
SPIDR-227ENST00000541342 NME7Q9Y5B8 376 aa17.92■□□□□ 0.46
SPIDR-227ENST00000541342 USH1CQ9Y6N9 552 aa17.92■□□□□ 0.46
SPIDR-227ENST00000541342 CYP3A5P20815 502 aa17.92■□□□□ 0.46
SPIDR-227ENST00000541342 OASLQ15646 514 aaKnown RBP17.92■□□□□ 0.46
SPIDR-227ENST00000541342 RNASEH2BQ5TBB1 312 aaKnown RBP17.92■□□□□ 0.46
SPIDR-227ENST00000541342 DNAJC24Q6P3W2 148 aa17.92■□□□□ 0.46
SPIDR-227ENST00000541342 LRRC37BQ96QE4 947 aa17.92■□□□□ 0.46
SPIDR-227ENST00000541342 CPXM1Q96SM3 734 aa17.92■□□□□ 0.46
SPIDR-227ENST00000541342 ZMYND8Q9ULU4 1186 aaPredicted RBP17.92■□□□□ 0.46
SPIDR-227ENST00000541342 SEPT4O43236 478 aa17.91■□□□□ 0.46
SPIDR-227ENST00000541342 KPNA6O60684 536 aa17.91■□□□□ 0.46
SPIDR-227ENST00000541342 PEX11AO75192 247 aa17.91■□□□□ 0.46
SPIDR-227ENST00000541342 ABL2P42684 1182 aa17.91■□□□□ 0.46
SPIDR-227ENST00000541342 NR1H3Q13133 447 aa17.91■□□□□ 0.46
SPIDR-227ENST00000541342 SPARCL1Q14515 664 aa17.91■□□□□ 0.46
SPIDR-227ENST00000541342 ARRDC4Q8NCT1 418 aa17.91■□□□□ 0.46
SPIDR-227ENST00000541342 SMG8Q8ND04 991 aaKnown RBP17.91■□□□□ 0.46
SPIDR-227ENST00000541342 KCNV2Q8TDN2 545 aa17.91■□□□□ 0.46
SPIDR-227ENST00000541342 MRPL45Q9BRJ2 306 aaKnown RBP17.91■□□□□ 0.46
SPIDR-227ENST00000541342 ZNF148Q9UQR1 794 aa17.91■□□□□ 0.46
SPIDR-227ENST00000541342 ATF7P17544 494 aaPredicted RBP17.91■□□□□ 0.46
SPIDR-227ENST00000541342 GPX6P59796 221 aa17.91■□□□□ 0.46
SPIDR-227ENST00000541342 PLEKHG4Q58EX7 1191 aa17.91■□□□□ 0.46
SPIDR-227ENST00000541342 FAM13CQ8NE31 585 aa17.91■□□□□ 0.46
SPIDR-227ENST00000541342 HEXIM2Q96MH2 286 aaKnown RBP17.91■□□□□ 0.46
SPIDR-227ENST00000541342 SMIM28A0A1B0GU29 152 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 F8VP50 259 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 ADAMTS4O75173 837 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 PIAS1O75925 651 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 CBX6O95503 412 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 CCND3P30281 292 aaPredicted RBP17.9■□□□□ 0.46
SPIDR-227ENST00000541342 EFTUD2Q15029 972 aaKnown RBP eCLIP17.9■□□□□ 0.46
SPIDR-227ENST00000541342 C9orf57Q5W0N0 161 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 TAF2Q6P1X5 1199 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 ZBED8Q8IZ13 594 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 BEST2Q8NFU1 509 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 MRRFQ96E11 262 aaKnown RBP17.9■□□□□ 0.46
SPIDR-227ENST00000541342 WDR83Q9BRX9 315 aaKnown RBP17.9■□□□□ 0.46
SPIDR-227ENST00000541342 IP6K2Q9UHH9 426 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 IPPQ9Y573 584 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 SNX9Q9Y5X1 595 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 ALOX15BO15296 676 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 ALDH1A1P00352 501 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 KRT15P19012 456 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 XKR4Q5GH76 650 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 OTOAQ7RTW8 1153 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 VSIG1Q86XK7 387 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 ZNF276Q8N554 614 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 C12orf29Q8N999 325 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 HAUS1Q96CS2 278 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 TTC25Q96NG3 672 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 RAB3IPQ96QF0 476 aaPredicted RBP17.9■□□□□ 0.46
SPIDR-227ENST00000541342 BATF3Q9NR55 127 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 CLUHO75153 1309 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 ERBB2P04626 1255 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 RARBP10826 455 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 VDRP11473 427 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 MRPS6P82932 125 aaKnown RBP17.9■□□□□ 0.46
SPIDR-227ENST00000541342 DPH6Q7L8W6 267 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 RCOR2Q8IZ40 523 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 TMEM121Q9BTD3 319 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 TBC1D10AQ9BXI6 508 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 RNF186Q9NXI6 227 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 SMG5Q9UPR3 1016 aaKnown RBP17.9■□□□□ 0.46
SPIDR-227ENST00000541342 CDY2AQ9Y6F7 541 aa17.9■□□□□ 0.46
SPIDR-227ENST00000541342 M0QYV0 167 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 ELNP15502 786 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 CA4P22748 312 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 GPD2P43304 727 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 NKX3-2P78367 333 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 MORF4L2Q15014 288 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 SMC6Q96SB8 1091 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 VPS37BQ9H9H4 285 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 KRT1P04264 644 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 LMNB2Q03252 620 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 SOX4Q06945 474 aaPredicted RBP17.89■□□□□ 0.45
SPIDR-227ENST00000541342 SETDB1Q15047 1291 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 DCUN1D2Q6PH85 259 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 SPOCD1Q6ZMY3 1216 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 LRRC52Q8N7C0 313 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 UBA3Q8TBC4 463 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 RNPEPL1Q9HAU8 725 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 GOLGA2P5Q9HBQ8 144 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 KANSL3Q9P2N6 904 aa17.89■□□□□ 0.45
SPIDR-227ENST00000541342 GOLGA8SH3BPF8 625 aa17.88■□□□□ 0.45
SPIDR-227ENST00000541342 SMNDC1O75940 238 aaKnown RBP eCLIP17.88■□□□□ 0.455e-8■□□□□ 11.3
SPIDR-227ENST00000541342 EPHB2P29323 1055 aa17.88■□□□□ 0.45
SPIDR-227ENST00000541342 CTC1Q2NKJ3 1217 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms