RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 RSRC2Q7L4I2 434 aaKnown RBP18.55■□□□□ 0.56
CLIP1-215ENST00000541108 RCOR2Q8IZ40 523 aa18.55■□□□□ 0.56
CLIP1-215ENST00000541108 DEFB106AQ8N104 65 aa18.55■□□□□ 0.56
CLIP1-215ENST00000541108 GOLGA1Q92805 767 aa18.55■□□□□ 0.56
CLIP1-215ENST00000541108 COMMD8Q9NX08 183 aa18.55■□□□□ 0.56
CLIP1-215ENST00000541108 IL37Q9NZH6 218 aa18.55■□□□□ 0.56
CLIP1-215ENST00000541108 FNIP2Q9P278 1114 aa18.55■□□□□ 0.56
CLIP1-215ENST00000541108 AFF4Q9UHB7 1163 aaKnown RBP18.55■□□□□ 0.56
CLIP1-215ENST00000541108 MAFFQ9ULX9 164 aa18.55■□□□□ 0.56
CLIP1-215ENST00000541108 USP18Q9UMW8 372 aa18.55■□□□□ 0.56
CLIP1-215ENST00000541108 C2CD2LO14523 706 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 ENDOD1O94919 500 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 VNN2O95498 520 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 FGGP02679 453 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 LTFP02788 710 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 ATF2P15336 505 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 BMPR1AP36894 532 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 CETN2P41208 172 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 COPS2P61201 443 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 ZNF211Q13398 564 aaPredicted RBP18.54■□□□□ 0.56
CLIP1-215ENST00000541108 RAB33AQ14088 237 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 C15orf59Q2T9L4 293 aaPredicted RBP18.54■□□□□ 0.56
CLIP1-215ENST00000541108 BOLA3Q53S33 107 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 DCAF6Q58WW2 860 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 BHLHA9Q7RTU4 235 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 LRRN4CLQ8ND94 238 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 FAM172AQ8WUF8 416 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 UBXN4Q92575 508 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 NDRG1Q92597 394 aaKnown RBP18.54■□□□□ 0.56
CLIP1-215ENST00000541108 RBM41Q96IZ5 413 aaKnown RBP18.54■□□□□ 0.56
CLIP1-215ENST00000541108 NPY6RQ99463 290 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 LZTS1Q9Y250 596 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 FAM92AA1XBS5 289 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 CCDC85CA6NKD9 419 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 CAPN9O14815 690 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 ADAM12O43184 909 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 LILRB3O75022 631 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 TRUB2O95900 331 aaKnown RBP18.54■□□□□ 0.56
CLIP1-215ENST00000541108 FYNP06241 537 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 CTSAP10619 480 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 TCF4P15884 667 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 ATP11AP98196 1134 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 DUSP4Q13115 394 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 DDR2Q16832 855 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 MGAT5BQ3V5L5 792 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 SH3PXD2AQ5TCZ1 1133 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 DENND5BQ6ZUT9 1274 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 BNIPLQ7Z465 357 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 KLHL23Q8NBE8 558 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 SCAMP5Q8TAC9 235 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 TBCBQ99426 244 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 ZBP1Q9H171 429 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 RXFP1Q9HBX9 757 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 NGRNQ9NPE2 291 aaKnown RBP18.54■□□□□ 0.56
CLIP1-215ENST00000541108 EHD2Q9NZN4 543 aa18.54■□□□□ 0.56
CLIP1-215ENST00000541108 CCDC188H7C350 402 aa18.53■□□□□ 0.56
CLIP1-215ENST00000541108 PRPSAP2O60256 369 aa18.53■□□□□ 0.56
CLIP1-215ENST00000541108 RTN3O95197 1032 aaPredicted RBP18.53■□□□□ 0.56
CLIP1-215ENST00000541108 RPL17P18621 184 aaKnown RBP18.53■□□□□ 0.56
CLIP1-215ENST00000541108 HDAC4P56524 1084 aa18.53■□□□□ 0.56
CLIP1-215ENST00000541108 CDO1Q16878 200 aa18.53■□□□□ 0.56
CLIP1-215ENST00000541108 LONRF2Q1L5Z9 754 aa18.53■□□□□ 0.56
CLIP1-215ENST00000541108 BSPRYQ5W0U4 402 aa18.53■□□□□ 0.56
CLIP1-215ENST00000541108 HFE2Q6ZVN8 426 aa18.53■□□□□ 0.56
CLIP1-215ENST00000541108 MON1AQ86VX9 555 aa18.53■□□□□ 0.56
CLIP1-215ENST00000541108 CMASQ8NFW8 434 aaPredicted RBP18.53■□□□□ 0.56
CLIP1-215ENST00000541108 CRISPLD1Q9H336 500 aa18.53■□□□□ 0.56
CLIP1-215ENST00000541108 SCML2Q9UQR0 700 aa18.53■□□□□ 0.56
CLIP1-215ENST00000541108 SLC27A5Q9Y2P5 690 aa18.53■□□□□ 0.56
CLIP1-215ENST00000541108 UQCRHLA0A096LP55 91 aa18.52■□□□□ 0.56
CLIP1-215ENST00000541108 UQCRHP07919 91 aa18.52■□□□□ 0.56
CLIP1-215ENST00000541108 IL1R2P27930 398 aa18.52■□□□□ 0.56
CLIP1-215ENST00000541108 SMC1AQ14683 1233 aaKnown RBP18.52■□□□□ 0.56
CLIP1-215ENST00000541108 ODF2Q5BJF6 829 aa18.52■□□□□ 0.56
CLIP1-215ENST00000541108 SLC13A5Q86YT5 568 aaPredicted RBP18.52■□□□□ 0.56
CLIP1-215ENST00000541108 MMGT1Q8N4V1 131 aa18.52■□□□□ 0.56
CLIP1-215ENST00000541108 TTC9BQ8N6N2 239 aa18.52■□□□□ 0.56
CLIP1-215ENST00000541108 TEKT4Q8WW24 435 aa18.52■□□□□ 0.56
CLIP1-215ENST00000541108 MAIP1Q8WWC4 291 aa18.52■□□□□ 0.56
CLIP1-215ENST00000541108 PGAP3Q96FM1 320 aaPredicted RBP18.52■□□□□ 0.56
CLIP1-215ENST00000541108 SEPT5Q99719 369 aaPredicted RBP18.52■□□□□ 0.56
CLIP1-215ENST00000541108 ABCC13Q9NSE7 274 aa18.52■□□□□ 0.56
CLIP1-215ENST00000541108 TMEM51Q9NW97 253 aa18.52■□□□□ 0.56
CLIP1-215ENST00000541108 SMARCAL1Q9NZC9 954 aa18.52■□□□□ 0.56
CLIP1-215ENST00000541108 IRAK3Q9Y616 596 aa18.52■□□□□ 0.56
CLIP1-215ENST00000541108 COL4A4P53420 1690 aaPredicted RBP18.51■□□□□ 0.55
CLIP1-215ENST00000541108 LCHNA4D1U4 455 aa18.51■□□□□ 0.55
CLIP1-215ENST00000541108 FSCN2O14926 492 aa18.51■□□□□ 0.55
CLIP1-215ENST00000541108 NCAM1P13591 858 aa18.51■□□□□ 0.55
CLIP1-215ENST00000541108 PTPN7P35236 360 aa18.51■□□□□ 0.55
CLIP1-215ENST00000541108 PPP2R5EQ16537 467 aa18.51■□□□□ 0.55
CLIP1-215ENST00000541108 ATP13A4Q4VNC1 1196 aa18.51■□□□□ 0.55
CLIP1-215ENST00000541108 ZFYVE27Q5T4F4 411 aa18.51■□□□□ 0.55
CLIP1-215ENST00000541108 SYPL2Q5VXT5 272 aa18.51■□□□□ 0.55
CLIP1-215ENST00000541108 TXNRD3NBQ6F5E7 133 aa18.51■□□□□ 0.55
CLIP1-215ENST00000541108 ARHGAP18Q8N392 663 aa18.51■□□□□ 0.55
CLIP1-215ENST00000541108 PCSK1NQ9UHG2 260 aa18.51■□□□□ 0.55
CLIP1-215ENST00000541108 NAALADL1Q9UQQ1 740 aa18.51■□□□□ 0.55
CLIP1-215ENST00000541108 EFR3BQ9Y2G0 817 aa18.51■□□□□ 0.55
CLIP1-215ENST00000541108 LINC01553A4QN01 128 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms