RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 ANKMY2Q8IV38 441 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 ZNF669Q96BR6 464 aaPredicted RBP14.73□□□□□ -0.05
COLCA1-204ENST00000540738 BLOC1S4Q9NUP1 217 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 UTP6Q9NYH9 597 aaKnown RBP14.73□□□□□ -0.05
COLCA1-204ENST00000540738 ITM2BQ9Y287 266 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 PTCH2Q9Y6C5 1203 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 MICAL2O94851 1124 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 ILF2Q12905 390 aaKnown RBP14.73□□□□□ -0.05
COLCA1-204ENST00000540738 ANKRD20A4Q4UJ75 823 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 ANKRD20A8PQ5CZ79 823 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 ANKRD20A2Q5SQ80 823 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 ANKRD20A1Q5TYW2 823 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 LENG9Q96B70 501 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 NAT9Q9BTE0 207 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.73□□□□□ -0.05
COLCA1-204ENST00000540738 MRFAP1Q9Y605 127 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 KLK7P49862 253 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 LIG3P49916 1009 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 FPGSQ05932 587 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 PHKG1Q16816 387 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 HSDL1Q3SXM5 330 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 OTOP2Q7RTS6 562 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 FAM71DQ8N9W8 422 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 TATDN2Q93075 761 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 ZSWIM1Q9BR11 485 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 C2orf49Q9BVC5 232 aaPredicted RBP14.72□□□□□ -0.05
COLCA1-204ENST00000540738 ABCB6Q9NP58 842 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 RIPK3Q9Y572 518 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 MYOM1P52179 1685 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 CCDC78A2IDD5 438 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 LRRIQ3A6PVS8 624 aaPredicted RBP14.72□□□□□ -0.05
COLCA1-204ENST00000540738 SPTLC1O15269 473 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 TSPAN3O60637 253 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 NDUFS2O75306 463 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 PROSCO94903 275 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 KCNA1Q09470 495 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 CCDC38Q502W7 563 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 ERMARDQ5T6L9 678 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 EFL1Q7Z2Z2 1120 aaKnown RBP14.72□□□□□ -0.05
COLCA1-204ENST00000540738 PHACTR4Q8IZ21 702 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 TMEM161BQ8NDZ6 487 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 LPPQ93052 612 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 STAMBPL1Q96FJ0 436 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 PRDM16Q9HAZ2 1276 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 RRAGDQ9NQL2 400 aaPredicted RBP14.72□□□□□ -0.05
COLCA1-204ENST00000540738 ATRNL1Q5VV63 1379 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 TSHZ1Q6ZSZ6 1077 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 SH3BP5LQ7L8J4 393 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 SPPL2BQ8TCT7 592 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 HAS1Q92839 578 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 HSFY1Q96LI6 401 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 LNPEPQ9UIQ6 1025 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 ANKRD63C9JTQ0 380 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 DCTN3O75935 186 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 ENDOD1O94919 500 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 ESRRAP11474 423 aaPredicted RBP14.72□□□□□ -0.05
COLCA1-204ENST00000540738 TUBP50607 506 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 MRPS25P82663 173 aaKnown RBP14.72□□□□□ -0.05
COLCA1-204ENST00000540738 MAPRE2Q15555 327 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 ACBD5Q5T8D3 534 aaPredicted RBP14.72□□□□□ -0.05
COLCA1-204ENST00000540738 PLPP4Q5VZY2 271 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 RSPH1Q8WYR4 309 aa14.72□□□□□ -0.05
COLCA1-204ENST00000540738 CICQ96RK0 1608 aaPredicted RBP14.72□□□□□ -0.05
COLCA1-204ENST00000540738 CFLARO15519 480 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 VPS26AO75436 327 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 RRM1P23921 792 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 ZNF200P98182 395 aaPredicted RBP14.71□□□□□ -0.05
COLCA1-204ENST00000540738 SLC6A3Q01959 620 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 MTF1Q14872 753 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 SMAD1Q15797 465 aaKnown RBP14.71□□□□□ -0.05
COLCA1-204ENST00000540738 KIAA0895Q8NCT3 520 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 CLPBQ9H078 707 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 PADI3Q9ULW8 664 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 BRAFP15056 766 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 SCNN1BP51168 640 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 OSCP1Q8WVF1 389 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 NMRK1Q9NWW6 199 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 PSD3Q9NYI0 1048 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 ZNF142P52746 1687 aaPredicted RBP14.71□□□□□ -0.05
COLCA1-204ENST00000540738 ZBTB39O15060 712 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 FNTAP49354 379 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 ARHGDIAP52565 204 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 METTL3Q86U44 580 aaKnown RBP14.71□□□□□ -0.05
COLCA1-204ENST00000540738 ASPSCR1Q9BZE9 553 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 ZNF510Q9Y2H8 683 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 HES2Q9Y543 173 aa14.71□□□□□ -0.05
COLCA1-204ENST00000540738 NPR3P17342 541 aa14.71□□□□□ -0.06
COLCA1-204ENST00000540738 SMPD1P17405 629 aa14.71□□□□□ -0.06
COLCA1-204ENST00000540738 ACAP1Q15027 740 aa14.71□□□□□ -0.06
COLCA1-204ENST00000540738 E4F1Q66K89 784 aaPredicted RBP14.71□□□□□ -0.06
COLCA1-204ENST00000540738 RGL4Q8IZJ4 473 aa14.71□□□□□ -0.06
COLCA1-204ENST00000540738 TOP6BLQ8N6T0 577 aa14.71□□□□□ -0.06
COLCA1-204ENST00000540738 OTUB1Q96FW1 271 aaPredicted RBP14.71□□□□□ -0.06
COLCA1-204ENST00000540738 C11orf84Q9BUA3 381 aaPredicted RBP14.71□□□□□ -0.06
COLCA1-204ENST00000540738 NT5MQ9NPB1 228 aa14.71□□□□□ -0.06
COLCA1-204ENST00000540738 RBPJLQ9UBG7 517 aa14.71□□□□□ -0.06
COLCA1-204ENST00000540738 PPARGC1AQ9UBK2 798 aaKnown RBP14.71□□□□□ -0.06
COLCA1-204ENST00000540738 ZMYND8Q9ULU4 1186 aaPredicted RBP14.71□□□□□ -0.06
COLCA1-204ENST00000540738 Q9Y3F1 56 aa14.71□□□□□ -0.06
COLCA1-204ENST00000540738 FRMD3A2A2Y4 597 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms