RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 RAB6BQ9NRW1 208 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 KCNH7Q9NS40 1196 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 ZDHHC7Q9NXF8 308 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 PAIP2BQ9ULR5 123 aaKnown RBP13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 ZNRF3Q9ULT6 936 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 MRPL11Q9Y3B7 192 aaKnown RBP13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 KLF11O14901 512 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 MAGEB3O15480 346 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 SNRPFP62306 86 aaKnown RBP13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 RPL10AP62906 217 aaKnown RBP13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 SP4Q02446 784 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 CUL2Q13617 745 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 CCNIQ14094 377 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 ACAP1Q15027 740 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 SMAD1Q15797 465 aaKnown RBP13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 LRRC8BQ6P9F7 803 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 TMC7Q7Z402 723 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 ADGRG6Q86SQ4 1221 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 SPATA18Q8TC71 538 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 VCPIP1Q96JH7 1222 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 MMP19Q99542 508 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 SIKE1Q9BRV8 207 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 WDR83Q9BRX9 315 aaKnown RBP13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 POMPQ9Y244 141 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 SLC44A4Q53GD3 710 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 KRT27Q7Z3Y8 459 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 POLNQ7Z5Q5 900 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 AMIGO3Q86WK7 504 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 SLC35B2Q8TB61 432 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 CCDC97Q96F63 343 aaPredicted RBP13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 RIT2Q99578 217 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 USP29Q9HBJ7 922 aa13.33□□□□□ -0.28
SFSWAP-209ENST00000540469 TMEM191CA6NGB0 347 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 CFLARO15519 480 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 ZC3H11AO75152 810 aaKnown RBP eCLIP13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 TNFAIP8O95379 198 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 TMEM191BP0C7N4 346 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 GTF2H1P32780 548 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 PIGHQ14442 188 aaPredicted RBP13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 TLR1Q15399 786 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 POTEAQ6S8J7 498 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 UGT2A3Q6UWM9 527 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 DNAJC14Q6Y2X3 702 aaPredicted RBP13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 PHF13Q86YI8 300 aaPredicted RBP13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 CERS5Q8N5B7 392 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 CCDC33Q8N5R6 958 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 CMTM5Q96DZ9 223 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 ZFRQ96KR1 1074 aaKnown RBP13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 PRICKLE1Q96MT3 831 aaPredicted RBP13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 MXRA8Q9BRK3 442 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 C1orf21Q9H246 121 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 TDRKHQ9Y2W6 561 aaKnown RBP13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 WDR64B1ANS9 1081 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 HDAC4P56524 1084 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 MPP3Q13368 585 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 DPYSL3Q14195 570 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 C16orf46Q6P387 395 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 C15orf52Q6ZUT6 534 aaKnown RBP13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 ZNF554Q86TJ5 538 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 GMCL1Q96IK5 515 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 THAP1Q9NVV9 213 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 CNTN3Q9P232 1028 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 HSFX1Q9UBD0 423 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 DMTF1Q9Y222 760 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 AP4B1Q9Y6B7 739 aa13.32□□□□□ -0.28
SFSWAP-209ENST00000540469 A0A0B4J269 797 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 VILLO15195 856 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 SPAG6O75602 509 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 MYCLP12524 364 aaPredicted RBP13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 CD19P15391 556 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 ROR1Q01973 937 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 FASTKD1Q53R41 847 aaKnown RBP13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 TMEM161BQ8NDZ6 487 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 ZFP28Q8NHY6 868 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 PIWIL2Q8TC59 973 aaKnown RBP13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 HSPBAP1Q96EW2 488 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 BTBD9Q96Q07 612 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 KCNK16Q96T55 309 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 ARHGEF38Q9NXL2 777 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 MYH9P35579 1960 aaKnown RBP13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 AIM2O14862 343 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 TOP3BO95985 862 aaKnown RBP13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 APRTP07741 180 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 KCNA4P22459 653 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 WASHC5Q12768 1159 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 CBX3Q13185 183 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 GRM2Q14416 872 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 PDPK2PQ6A1A2 396 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 CASC4Q6P4E1 433 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 RNF111Q6ZNA4 994 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 MAP4K3Q8IVH8 894 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 RTKN2Q8IZC4 609 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 TMEM35BQ8NCS4 154 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 AGR3Q8TD06 166 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 DEPDC1BQ8WUY9 529 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 ZNF606Q8WXB4 792 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 XPO1O14980 1071 aaKnown RBP13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 DCXO43602 365 aa13.31□□□□□ -0.28
SFSWAP-209ENST00000540469 UGT1A9O60656 530 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms