RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 TFB1MQ8WVM0 346 aaKnown RBP11.2□□□□□ -0.62
CLIP1-213ENST00000540338 C18orf25Q96B23 403 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-213ENST00000540338 MCRS1Q96EZ8 462 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 RRAGCQ9HB90 399 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 TJP2Q9UDY2 1190 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 TUBGCP4Q9UGJ1 667 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 EEF2KO00418 725 aaKnown RBP11.2□□□□□ -0.62
CLIP1-213ENST00000540338 KPNA6O60684 536 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 ZNF189O75820 626 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-213ENST00000540338 FSCN1Q16658 493 aaKnown RBP11.2□□□□□ -0.62
CLIP1-213ENST00000540338 LRRC6Q86X45 466 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 UNC45BQ8IWX7 931 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 PPP4R1Q8TF05 950 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 HSFY1Q96LI6 401 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 ECT2Q9H8V3 914 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 XAB2Q9HCS7 855 aaKnown RBP11.2□□□□□ -0.62
CLIP1-213ENST00000540338 KLC4Q9NSK0 619 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 A0A0G2JND7 137 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 ATP5HO75947 161 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 SNRPAP09012 282 aaKnown RBP11.2□□□□□ -0.62
CLIP1-213ENST00000540338 SESN2P58004 480 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-213ENST00000540338 C9orf57Q5W0N0 161 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 RWDD4Q6NW29 188 aaKnown RBP11.2□□□□□ -0.62
CLIP1-213ENST00000540338 RNF139Q8WU17 664 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 NSMCE1Q8WV22 266 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 CKAP2Q8WWK9 683 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 SNRNP25Q9BV90 132 aaKnown RBP11.2□□□□□ -0.62
CLIP1-213ENST00000540338 SLC13A1Q9BZW2 595 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 USH1CQ9Y6N9 552 aa11.2□□□□□ -0.62
CLIP1-213ENST00000540338 SOCS7O14512 581 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 THP07101 528 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 SRGAP2BP0DMP2 458 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 ZBTB48P10074 688 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-213ENST00000540338 RBL1P28749 1068 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 PSMC4P43686 418 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 TMPRSS15P98073 1019 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 ANKRD20A8PQ5CZ79 823 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 WDTC1Q8N5D0 677 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.19□□□□□ -0.62
CLIP1-213ENST00000540338 GABPB2Q8TAK5 448 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-213ENST00000540338 EPAS1Q99814 870 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 EIF2AQ9BY44 585 aaKnown RBP11.19□□□□□ -0.62
CLIP1-213ENST00000540338 SDCBP2Q9H190 292 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 ALG13Q9NP73 1137 aaKnown RBP11.19□□□□□ -0.62
CLIP1-213ENST00000540338 HAUS2Q9NVX0 235 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 BFARQ9NZS9 450 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 DCTN4Q9UJW0 460 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 AP1G2O75843 785 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 ACAT1P24752 427 aaKnown RBP11.19□□□□□ -0.62
CLIP1-213ENST00000540338 YWHAZP63104 245 aaKnown RBP11.19□□□□□ -0.62
CLIP1-213ENST00000540338 QPCTQ16769 361 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 UPF1Q92900 1129 aaKnown RBP eCLIP11.19□□□□□ -0.62
CLIP1-213ENST00000540338 KCNN1Q92952 543 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 L3MBTL3Q96JM7 780 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-213ENST00000540338 TXLNGYQ9BZA5 131 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 R3HDMLQ9H3Y0 253 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 LRRC4CQ9HCJ2 640 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 SNAI1O95863 264 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-213ENST00000540338 CD48P09326 243 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 AKR1A1P14550 325 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 PTPN7P35236 360 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 SCTRP47872 440 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 LHX1P48742 406 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 ADIGQ0VDE8 80 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 PMF1Q6P1K2 205 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 ZNF449Q6P9G9 518 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 DEFB106AQ8N104 65 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 ARHGAP24Q8N264 748 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 PGBD4Q96DM1 585 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 C16orf70Q9BSU1 422 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 TUBB6Q9BUF5 446 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.19□□□□□ -0.62
CLIP1-213ENST00000540338 MAGED2Q9UNF1 606 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-213ENST00000540338 SMIM28A0A1B0GU29 152 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 GPR182O15218 404 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 NCAM1P13591 858 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 NR2C2P49116 596 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 CRYBB1P53674 252 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-213ENST00000540338 COG7P83436 770 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 SNX17Q15036 470 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 ZC3H12AQ5D1E8 599 aaKnown RBP11.19□□□□□ -0.62
CLIP1-213ENST00000540338 MDH1BQ5I0G3 518 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 RNASEH2BQ5TBB1 312 aaKnown RBP11.19□□□□□ -0.62
CLIP1-213ENST00000540338 TTC39BQ5VTQ0 682 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-213ENST00000540338 CCDC33Q8N5R6 958 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 OLIG1Q8TAK6 271 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 SLC35B2Q8TB61 432 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 PRCCQ92733 491 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-213ENST00000540338 SNX27Q96L92 541 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 TRIM62Q9BVG3 475 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 MORF4L1Q9UBU8 362 aa11.19□□□□□ -0.62
CLIP1-213ENST00000540338 MYH9P35579 1960 aaKnown RBP11.18□□□□□ -0.62
CLIP1-213ENST00000540338 PHIPQ8WWQ0 1821 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 C2CD4BA6NLJ0 364 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 ZBTB42B2RXF5 422 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 TOMM70O94826 608 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 KLRC2P26717 231 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 IL1R2P27930 398 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 SERPINB6P35237 376 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 FDFT1P37268 417 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms