RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	KRT78	Q8N1N4	520 aa		3.34	□□□□□ -1.87
CD44-238	ENST00000534296	CCDC150	Q8NCX0	1101 aa		3.34	□□□□□ -1.87
CD44-238	ENST00000534296	ADAMTS18	Q8TE60	1221 aa		3.34	□□□□□ -1.87
CD44-238	ENST00000534296	DDB2	Q92466	427 aa		3.34	□□□□□ -1.87
CD44-238	ENST00000534296	DPF1	Q92782	380 aa		3.34	□□□□□ -1.87
CD44-238	ENST00000534296	CUL5	Q93034	780 aa		3.34	□□□□□ -1.87
CD44-238	ENST00000534296	HIST1H2AA	Q96QV6	131 aa		3.34	□□□□□ -1.87
CD44-238	ENST00000534296	FAM118B	Q9BPY3	351 aa		3.34	□□□□□ -1.87
CD44-238	ENST00000534296	CHST8	Q9H2A9	424 aa		3.34	□□□□□ -1.87
CD44-238	ENST00000534296	HEYL	Q9NQ87	328 aa	Predicted RBP	3.34	□□□□□ -1.87
CD44-238	ENST00000534296	COL20A1	Q9P218	1284 aa		3.34	□□□□□ -1.87
CD44-238	ENST00000534296	PI4KB	Q9UBF8	816 aa		3.34	□□□□□ -1.87
CD44-238	ENST00000534296	MGAT4C	Q9UBM8	478 aa		3.34	□□□□□ -1.87
CD44-238	ENST00000534296	PCDHGB6	Q9Y5F9	930 aa		3.34	□□□□□ -1.87
CD44-238	ENST00000534296	ZNF804B	A4D1E1	1349 aa		3.34	□□□□□ -1.87
CD44-238	ENST00000534296	POLR2A	P24928	1970 aa	Known RBP	3.33	□□□□□ -1.88
CD44-238	ENST00000534296		A8MVJ9	347 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	TISP43	B9A030	160 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	EXOC5	O00471	708 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	DSCR3	O14972	297 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	MT-ND5	P03915	603 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	PRR35	P0CG20	571 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	FPR3	P25089	353 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	MMP13	P45452	471 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	COPB1	P53618	953 aa	Known RBP	3.33	□□□□□ -1.88
CD44-238	ENST00000534296	TFF2	Q03403	129 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	DAG1	Q14118	895 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	CLCA4	Q14CN2	919 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	MTX3	Q5HYI7	312 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	CC2D1B	Q5T0F9	858 aa	Known RBP	3.33	□□□□□ -1.88
CD44-238	ENST00000534296	MORN5	Q5VZ52	161 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	ANO7	Q6IWH7	933 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	BEND5	Q7L4P6	421 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	KCTD20	Q7Z5Y7	419 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	CHSY1	Q86X52	802 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	CNGA4	Q8IV77	575 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	FSTL5	Q8N475	847 aa	Predicted RBP	3.33	□□□□□ -1.88
CD44-238	ENST00000534296	CCDC33	Q8N5R6	958 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	PRSS3P2	Q8NHM4	247 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	DENND1A	Q8TEH3	1009 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	PHKB	Q93100	1093 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	ZDHHC12	Q96GR4	267 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	ZC3H10	Q96K80	434 aa	Known RBP	3.33	□□□□□ -1.88
CD44-238	ENST00000534296	LENG8	Q96PV6	779 aa	Predicted RBP	3.33	□□□□□ -1.88
CD44-238	ENST00000534296	THAP7	Q9BT49	309 aa	Predicted RBP	3.33	□□□□□ -1.88
CD44-238	ENST00000534296	CINP	Q9BW66	212 aa	Predicted RBP	3.33	□□□□□ -1.88
CD44-238	ENST00000534296	CORO2B	Q9UQ03	480 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	TBC1D30	Q9Y2I9	924 aa		3.33	□□□□□ -1.88
CD44-238	ENST00000534296	WIPF3	A6NGB9	483 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	DNAJC9-AS1	A6NH13	148 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	CCNT2	O60583	730 aa	Known RBP	3.32	□□□□□ -1.88
CD44-238	ENST00000534296	USP12	O75317	370 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	MT-CO3	P00414	261 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	ERBB2	P04626	1255 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	HGF	P14210	728 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	IL1R1	P14778	569 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	BTF3	P20290	206 aa	Known RBP	3.32	□□□□□ -1.88
CD44-238	ENST00000534296	ADRA1D	P25100	572 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	MPG	P29372	298 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	PTGER1	P34995	402 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	ZNF81	P51508	661 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	ALDH5A1	P51649	535 aa	Predicted RBP	3.32	□□□□□ -1.88
CD44-238	ENST00000534296	TBX4	P57082	545 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	EIF4A1	P60842	406 aa	Known RBP	3.32	□□□□□ -1.88
CD44-238	ENST00000534296	PICALM	Q13492	652 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	KCNB1	Q14721	858 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	NPY5R	Q15761	445 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	PLAG1	Q6DJT9	500 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	FCRL6	Q6DN72	434 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	SLC18B1	Q6NT16	456 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	USP17L6P	Q6QN14	398 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	CATSPERG	Q6ZRH7	1159 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	DCDC5	Q6ZRR9	648 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	BCDIN3D	Q7Z5W3	292 aa	Known RBP	3.32	□□□□□ -1.88
CD44-238	ENST00000534296	YTHDF3	Q7Z739	585 aa	Known RBP	3.32	□□□□□ -1.88
CD44-238	ENST00000534296	C11orf96	Q7Z7L8	435 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	P3H2	Q8IVL5	708 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	GALNT16	Q8N428	558 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	PNPLA1	Q8N8W4	532 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	PMM1	Q92871	262 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	RPL36AL	Q969Q0	106 aa	Known RBP	3.32	□□□□□ -1.88
CD44-238	ENST00000534296	RITA1	Q96K30	269 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	ZBTB45	Q96K62	511 aa	Predicted RBP	3.32	□□□□□ -1.88
CD44-238	ENST00000534296	C5orf34	Q96MH7	638 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	MACROD1	Q9BQ69	325 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	EIF2A	Q9BY44	585 aa	Known RBP	3.32	□□□□□ -1.88
CD44-238	ENST00000534296	MAGEB5	Q9BZ81	275 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	TBC1D23	Q9NUY8	699 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	TMOD4	Q9NZQ9	345 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	DKK4	Q9UBT3	224 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	ZNF70	Q9UC06	446 aa	Predicted RBP	3.32	□□□□□ -1.88
CD44-238	ENST00000534296	HPSE	Q9Y251	543 aa		3.32	□□□□□ -1.88
CD44-238	ENST00000534296	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	3.32	□□□□□ -1.88
CD44-238	ENST00000534296	KAT6A	Q92794	2004 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	PCSK5	Q92824	1860 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	WDR17	Q8IZU2	1322 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	WDR91	A4D1P6	747 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	CGB1	A6NKQ9	187 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	COQ9	O75208	318 aa		3.31	□□□□□ -1.88
CD44-238	ENST00000534296	LATS1	O95835	1130 aa		3.31	□□□□□ -1.88

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