RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 TMEM92Q6UXU6 159 aa16.72■□□□□ 0.27
CHMP4A-207ENST00000533523 C12orf40Q86WS4 652 aa16.72■□□□□ 0.27
CHMP4A-207ENST00000533523 GRAMD1CQ8IYS0 662 aa16.72■□□□□ 0.27
CHMP4A-207ENST00000533523 OR6B3Q8NGW1 331 aa16.72■□□□□ 0.27
CHMP4A-207ENST00000533523 WHAMMQ8TF30 809 aa16.72■□□□□ 0.27
CHMP4A-207ENST00000533523 RLN3Q8WXF3 142 aa16.72■□□□□ 0.27
CHMP4A-207ENST00000533523 ADAM33Q9BZ11 813 aa16.72■□□□□ 0.27
CHMP4A-207ENST00000533523 KIAA1586Q9HCI6 787 aa16.72■□□□□ 0.27
CHMP4A-207ENST00000533523 CGNQ9P2M7 1197 aaKnown RBP16.72■□□□□ 0.27
CHMP4A-207ENST00000533523 ATXN2Q99700 1313 aaKnown RBP16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 MAST4O15021 2626 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 MAP3K13O43283 966 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 KAT7O95251 611 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 OAS1P00973 400 aaKnown RBP16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 HNRNPLP14866 589 aaKnown RBP eCLIP16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 CASP1P29466 404 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 GNL1P36915 607 aaPredicted RBP16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 SLC6A11P48066 632 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 PPP3CCP48454 512 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 CACNA2D1P54289 1103 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 NOP14P78316 857 aaKnown RBP16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 MRPS21P82921 87 aaKnown RBP16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 TAF10Q12962 218 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 TDRD10Q5VZ19 366 aaKnown RBP16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 LPCAT2Q7L5N7 544 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 TRAPPC11Q7Z392 1133 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 DDX42Q86XP3 938 aaKnown RBP eCLIP16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 IL17RCQ8NAC3 791 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 SCFD1Q8WVM8 642 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 HMGB4Q8WW32 186 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 C8orf48Q96LL4 319 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 SLITRK1Q96PX8 696 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 PNKPQ96T60 521 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 ZNF518BQ9C0D4 1074 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 ELOVL4Q9GZR5 314 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 RNF38Q9H0F5 515 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 GZF1Q9H116 711 aaPredicted RBP16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 DPEP3Q9H4B8 488 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 ZDHHC4Q9NPG8 344 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 ARHGEF4Q9NR80 690 aa16.71■□□□□ 0.27
CHMP4A-207ENST00000533523 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 TCRBV21S2A2A0A5A6 115 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 SGK1O00141 431 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 TAF4O00268 1085 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 CLDN5O00501 218 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 OLFM2O95897 454 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 TNNI1P19237 187 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 MAPK8P45983 427 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 CYP2J2P51589 502 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 IRX4P78413 519 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 SNRNP35Q16560 246 aaKnown RBP16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 ZSCAN23Q3MJ62 389 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 TRIM61Q5EBN2 209 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 LRSAM1Q6UWE0 723 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 ELOA2Q8IYF1 753 aaPredicted RBP16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 TMEFF1Q8IYR6 380 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 RDH13Q8NBN7 331 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 GOLGA5Q8TBA6 731 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 FBXO32Q969P5 355 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 FNBP1Q96RU3 617 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 CGRRF1Q99675 332 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 POLMQ9NP87 494 aaPredicted RBP16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 SLC39A2Q9NP94 309 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 AGPAT3Q9NRZ7 376 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 TMEM30AQ9NV96 361 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 HOOK1Q9UJC3 728 aaKnown RBP16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 NME7Q9Y5B8 376 aa16.7■□□□□ 0.26
CHMP4A-207ENST00000533523 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 CDX4O14627 284 aaPredicted RBP16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 KLRC4O43908 158 aa16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 KIF20AO95235 890 aa16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 PRR29P0C7W0 189 aa16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 PTPN1P18031 435 aaKnown RBP16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 HOXD13P35453 343 aa16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 EIF2DP41214 584 aaKnown RBP16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 P2RY2P41231 377 aa16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 PNOCQ13519 176 aa16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 KMT5BQ4FZB7 885 aa16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 EOGTQ5NDL2 527 aa16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 NELFCDQ8IXH7 590 aa16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 PGBD3Q8N328 593 aa16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 B3GALNT2Q8NCR0 500 aa16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 DEFB124Q8NES8 71 aa16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 OLIG1Q8TAK6 271 aa16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 CCDC127Q96BQ5 260 aa16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 NUSAP1Q9BXS6 441 aaKnown RBP16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 ATP8B3O60423 1300 aa16.69■□□□□ 0.26
CHMP4A-207ENST00000533523 A8MXQ7 604 aa16.68■□□□□ 0.26
CHMP4A-207ENST00000533523 TACC1O75410 805 aa16.68■□□□□ 0.26
CHMP4A-207ENST00000533523 CAPNS1P04632 268 aa16.68■□□□□ 0.26
CHMP4A-207ENST00000533523 RPN1P04843 607 aaKnown RBP16.68■□□□□ 0.26
CHMP4A-207ENST00000533523 CEACAM1P13688 526 aa16.68■□□□□ 0.26
CHMP4A-207ENST00000533523 CSRP1P21291 193 aaKnown RBP16.68■□□□□ 0.26
CHMP4A-207ENST00000533523 GRIA2P42262 883 aa16.68■□□□□ 0.26
CHMP4A-207ENST00000533523 CYP24A1Q07973 514 aa16.68■□□□□ 0.26
CHMP4A-207ENST00000533523 LMAN2Q12907 356 aa16.68■□□□□ 0.26
CHMP4A-207ENST00000533523 TRPC3Q13507 836 aa16.68■□□□□ 0.26
CHMP4A-207ENST00000533523 KNOP1Q1ED39 458 aaKnown RBP16.68■□□□□ 0.26
CHMP4A-207ENST00000533523 WDR72Q3MJ13 1102 aa16.68■□□□□ 0.26
CHMP4A-207ENST00000533523 HSF5Q4G112 596 aaPredicted RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms