RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 SPICE1Q8N0Z3 855 aa4.52□□□□□ -1.69
CD44-233ENST00000531141 ABHD11Q8NFV4 315 aa4.52□□□□□ -1.69
CD44-233ENST00000531141 PRR25Q96S07 402 aa4.52□□□□□ -1.69
CD44-233ENST00000531141 GDF15Q99988 308 aa4.52□□□□□ -1.69
CD44-233ENST00000531141 KLK15Q9H2R5 256 aa4.52□□□□□ -1.69
CD44-233ENST00000531141 NECTIN3Q9NQS3 549 aa4.52□□□□□ -1.69
CD44-233ENST00000531141 GJB4Q9NTQ9 266 aa4.52□□□□□ -1.69
CD44-233ENST00000531141 RGL1Q9NZL6 768 aa4.52□□□□□ -1.69
CD44-233ENST00000531141 TMOD4Q9NZQ9 345 aa4.52□□□□□ -1.69
CD44-233ENST00000531141 STEAP1Q9UHE8 339 aa4.52□□□□□ -1.69
CD44-233ENST00000531141 ZNHIT2Q9UHR6 403 aa4.52□□□□□ -1.69
CD44-233ENST00000531141 ST3GAL5Q9UNP4 418 aa4.52□□□□□ -1.69
CD44-233ENST00000531141 COL15A1P39059 1388 aa4.52□□□□□ -1.69
CD44-233ENST00000531141 ABHD14A-ACY1A0A1B0GW23 586 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 AGPSO00116 658 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 EXOC5O00471 708 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 CCNT2O60583 730 aaKnown RBP4.51□□□□□ -1.69
CD44-233ENST00000531141 NDST3O95803 873 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 ARP10275 920 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 HTR7P34969 479 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 PPM1AP35813 382 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 TECP42680 631 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 CLK3P49761 638 aaKnown RBP4.51□□□□□ -1.69
CD44-233ENST00000531141 NSUN2Q08J23 767 aaKnown RBP eCLIP4.51□□□□□ -1.69
CD44-233ENST00000531141 MORC3Q14149 939 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 KRTAP15-1Q3LI76 137 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.51□□□□□ -1.69
CD44-233ENST00000531141 ABLIM2Q6H8Q1 611 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 CEP85Q6P2H3 762 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 KIAA0408Q6ZU52 694 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 USP49Q70CQ1 688 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 PRIMA1Q86XR5 153 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 RASAL3Q86YV0 1011 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 SIRT6Q8N6T7 355 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 TMEM41AQ96HV5 264 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 ZBTB45Q96K62 511 aaPredicted RBP4.51□□□□□ -1.69
CD44-233ENST00000531141 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.51□□□□□ -1.69
CD44-233ENST00000531141 AS3MTQ9HBK9 375 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 CPNE5Q9HCH3 593 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 SNX15Q9NRS6 342 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 SEMA4GQ9NTN9 838 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 ASB6Q9NWX5 421 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 CA14Q9ULX7 337 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 WNT6Q9Y6F9 365 aa4.51□□□□□ -1.69
CD44-233ENST00000531141 ADAMTS3O15072 1205 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 TMPRSS11DO60235 418 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 PLA2G6O60733 806 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 COQ9O75208 318 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 PMPCBO75439 489 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 NUDT3O95989 172 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 MYCLP12524 364 aaPredicted RBP4.5□□□□□ -1.69
CD44-233ENST00000531141 BMP5P22003 454 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 NTSR1P30989 418 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 TNFAIP2Q03169 654 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 OS9Q13438 667 aaPredicted RBP4.5□□□□□ -1.69
CD44-233ENST00000531141 STARD3Q14849 445 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 MAPKAPK3Q16644 382 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 TBC1D25Q3MII6 688 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 PTCHD4Q6ZW05 846 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 SFTPA1Q8IWL2 248 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 SYTL1Q8IYJ3 562 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 FSTL5Q8N475 847 aaPredicted RBP4.5□□□□□ -1.69
CD44-233ENST00000531141 BOLLQ8N9W6 283 aaKnown RBP4.5□□□□□ -1.69
CD44-233ENST00000531141 GLIS1Q8NBF1 620 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 NGDNQ8NEJ9 315 aaKnown RBP4.5□□□□□ -1.69
CD44-233ENST00000531141 NELL1Q92832 810 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 WDYHV1Q96HA8 205 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 WDR24Q96S15 920 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 THAP7Q9BT49 309 aaPredicted RBP4.5□□□□□ -1.69
CD44-233ENST00000531141 TTLL2Q9BWV7 592 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 PCDHAC1Q9H158 963 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 PRDM13Q9H4Q3 707 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 SLITRK6Q9H5Y7 841 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 RIOX1Q9H6W3 641 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 PLCB1Q9NQ66 1216 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 ARPP21Q9UBL0 812 aaPredicted RBP4.5□□□□□ -1.69
CD44-233ENST00000531141 NKX1-2Q9UD57 310 aaPredicted RBP4.5□□□□□ -1.69
CD44-233ENST00000531141 AMFRQ9UKV5 643 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 SLC39A10Q9ULF5 831 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 LRCH1Q9Y2L9 728 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 SLC27A6Q9Y2P4 619 aa4.5□□□□□ -1.69
CD44-233ENST00000531141 POLR2AP24928 1970 aaKnown RBP4.49□□□□□ -1.69
CD44-233ENST00000531141 OR2W5A6NFC9 320 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 CES2O00748 559 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 PROP1O75360 226 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 GLP2RO95838 553 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 FAM163BP0C2L3 166 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 ELLP55199 621 aaPredicted RBP4.49□□□□□ -1.69
CD44-233ENST00000531141 EIF4A1P60842 406 aaKnown RBP4.49□□□□□ -1.69
CD44-233ENST00000531141 KRTAP1-1Q07627 177 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 ATP1A4Q13733 1029 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 PCID2Q5JVF3 399 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 ZNF362Q5T0B9 420 aaPredicted RBP4.49□□□□□ -1.69
CD44-233ENST00000531141 SUMO4Q6EEV6 95 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 KIRREL2Q6UWL6 708 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 CLEC9AQ6UXN8 241 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 AMIGO2Q86SJ2 522 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 METTL25Q8N6Q8 603 aa4.49□□□□□ -1.69
CD44-233ENST00000531141 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.49□□□□□ -1.69
CD44-233ENST00000531141 ABHD5Q8WTS1 349 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms