RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 LRRC8DQ7L1W4 858 aa21.63■■□□□ 1.05
VPS28-209ENST00000528142 ZMIZ2Q8NF64 920 aa21.63■■□□□ 1.05
VPS28-209ENST00000528142 OR2W6PQ8NHA6 318 aa21.63■■□□□ 1.05
VPS28-209ENST00000528142 CCHCR1Q8TD31 782 aa21.63■■□□□ 1.05
VPS28-209ENST00000528142 RSPH1Q8WYR4 309 aa21.63■■□□□ 1.05
VPS28-209ENST00000528142 NDRG1Q92597 394 aaKnown RBP21.63■■□□□ 1.05
VPS28-209ENST00000528142 ACBD6Q9BR61 282 aa21.63■■□□□ 1.05
VPS28-209ENST00000528142 SNRNP25Q9BV90 132 aaKnown RBP21.63■■□□□ 1.05
VPS28-209ENST00000528142 DSEQ9UL01 958 aa21.63■■□□□ 1.05
VPS28-209ENST00000528142 APOC4-APOC2K7ER74 178 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 DNM1LO00429 736 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 APOC2P02655 101 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 ITGB1P05556 798 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 RARGP13631 454 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 MATKP42679 507 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 VPS41P49754 854 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 NDUFV1P49821 464 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 CDR1P51861 262 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 GPNMBQ14956 572 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 SLMAPQ14BN4 828 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 ZC3H12AQ5D1E8 599 aaKnown RBP21.62■■□□□ 1.05
VPS28-209ENST00000528142 CEP85LQ5SZL2 805 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 FAM171BQ6P995 826 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 GLB1LQ6UWU2 654 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 METTL23Q86XA0 190 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 VSIG1Q86XK7 387 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 FAM126BQ8IXS8 530 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 BBOF1Q8ND07 529 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 RNF208Q9H0X6 261 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 LRRC4Q9HBW1 653 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 TMEM30AQ9NV96 361 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 GPATCH2LQ9NWQ4 482 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 B4GALT3O60512 393 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 DAB1O75553 588 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 AP1G2O75843 785 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 MNX1P50219 401 aaPredicted RBP21.62■■□□□ 1.05
VPS28-209ENST00000528142 CACNA2D1P54289 1103 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 DSC1Q08554 894 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 CA9Q16790 459 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 CTU1Q7Z7A3 348 aaKnown RBP21.62■■□□□ 1.05
VPS28-209ENST00000528142 MAP7D3Q8IWC1 876 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 DEFB106AQ8N104 65 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 HASPINQ8TF76 798 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 EXOC4Q96A65 974 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 SUSD3Q96L08 255 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 RNF157Q96PX1 679 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 PKMYT1Q99640 499 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 TMEM121Q9BTD3 319 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 FTHL17Q9BXU8 183 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 SEMA4AQ9H3S1 761 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 PCDH18Q9HCL0 1135 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 ANAPC5Q9UJX4 755 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 OGDHLQ9ULD0 1010 aa21.62■■□□□ 1.05
VPS28-209ENST00000528142 GOLGA6CA6NDK9 693 aa21.61■■□□□ 1.05
VPS28-209ENST00000528142 F8W810 466 aa21.61■■□□□ 1.05
VPS28-209ENST00000528142 DDHD2O94830 711 aa21.61■■□□□ 1.05
VPS28-209ENST00000528142 NUDT17P0C025 328 aa21.61■■□□□ 1.05
VPS28-209ENST00000528142 ZSCAN5DPP0CG00 497 aa21.61■■□□□ 1.05
VPS28-209ENST00000528142 GOLGA6DP0CG33 693 aa21.61■■□□□ 1.05
VPS28-209ENST00000528142 PECAM1P16284 738 aaPredicted RBP21.61■■□□□ 1.05
VPS28-209ENST00000528142 TKTL1P51854 596 aa21.61■■□□□ 1.05
VPS28-209ENST00000528142 ATXN1P54253 815 aaKnown RBP21.61■■□□□ 1.05
VPS28-209ENST00000528142 YWHAZP63104 245 aaKnown RBP21.61■■□□□ 1.05
VPS28-209ENST00000528142 RAB41Q5JT25 222 aa21.61■■□□□ 1.05
VPS28-209ENST00000528142 STRADAQ7RTN6 431 aa21.61■■□□□ 1.05
VPS28-209ENST00000528142 ZNF280BQ86YH2 543 aa21.61■■□□□ 1.05
VPS28-209ENST00000528142 NT5C3BQ969T7 300 aa21.61■■□□□ 1.05
VPS28-209ENST00000528142 KCNK16Q96T55 309 aa21.61■■□□□ 1.05
VPS28-209ENST00000528142 ADAM7Q9H2U9 754 aa21.61■■□□□ 1.05
VPS28-209ENST00000528142 TMBIM4Q9HC24 238 aa21.61■■□□□ 1.05
VPS28-209ENST00000528142 GOLGA6AQ9NYA3 693 aa21.61■■□□□ 1.05
VPS28-209ENST00000528142 CALCOCO1Q9P1Z2 691 aa21.61■■□□□ 1.05
VPS28-209ENST00000528142 HHLA1C9JL84 531 aa21.6■■□□□ 1.05
VPS28-209ENST00000528142 NBNO60934 754 aa21.6■■□□□ 1.05
VPS28-209ENST00000528142 ETS1P14921 441 aa21.6■■□□□ 1.05
VPS28-209ENST00000528142 CHKAP35790 457 aa21.6■■□□□ 1.05
VPS28-209ENST00000528142 TFDP2Q14188 446 aa21.6■■□□□ 1.05
VPS28-209ENST00000528142 KRT81Q14533 505 aa21.6■■□□□ 1.05
VPS28-209ENST00000528142 SLC25A52Q3SY17 297 aa21.6■■□□□ 1.05
VPS28-209ENST00000528142 NOMO2Q5JPE7 1267 aa21.6■■□□□ 1.05
VPS28-209ENST00000528142 INTS6LQ5JSJ4 861 aaKnown RBP21.6■■□□□ 1.05
VPS28-209ENST00000528142 ERMARDQ5T6L9 678 aa21.6■■□□□ 1.05
VPS28-209ENST00000528142 IZUMO3Q5VZ72 239 aa21.6■■□□□ 1.05
VPS28-209ENST00000528142 HIBCHQ6NVY1 386 aaPredicted RBP21.6■■□□□ 1.05
VPS28-209ENST00000528142 BNIPLQ7Z465 357 aa21.6■■□□□ 1.05
VPS28-209ENST00000528142 SLC2A13Q96QE2 648 aa21.6■■□□□ 1.05
VPS28-209ENST00000528142 MAK16Q9BXY0 300 aaKnown RBP21.6■■□□□ 1.05
VPS28-209ENST00000528142 CSNK1G1Q9HCP0 422 aa21.6■■□□□ 1.05
VPS28-209ENST00000528142 PRDM10Q9NQV6 1147 aa21.6■■□□□ 1.05
VPS28-209ENST00000528142 ZNF487B1APH4 448 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 FBXO21O94952 628 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 TYMPP19971 482 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 RABGGTBP53611 331 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 SIX6OS1Q8N1H7 587 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 MYLPFQ96A32 169 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 FAM149B1Q96BN6 582 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 FAF2Q96CS3 445 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 SMARCD1Q96GM5 515 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 ZNF333Q96JL9 665 aa21.59■■□□□ 1.05
VPS28-209ENST00000528142 PCDH9Q9HC56 1237 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms