RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 TLL1O43897 1013 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 LTFP02788 710 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 URODP06132 367 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 RPL17P18621 184 aaKnown RBP21.98■■□□□ 1.11
VPS28-208ENST00000527797 OR1D2P34982 312 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 ROR1Q01973 937 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 DDR2Q16832 855 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 DCAF6Q58WW2 860 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 TXNRD3NBQ6F5E7 133 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 HFE2Q6ZVN8 426 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 SLC13A5Q86YT5 568 aaPredicted RBP21.98■■□□□ 1.11
VPS28-208ENST00000527797 VPS52Q8N1B4 723 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 SCAMP5Q8TAC9 235 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 SP7Q8TDD2 431 aaPredicted RBP21.98■■□□□ 1.11
VPS28-208ENST00000527797 CENPIQ92674 756 aaPredicted RBP21.98■■□□□ 1.11
VPS28-208ENST00000527797 CLP1Q92989 425 aaKnown RBP21.98■■□□□ 1.11
VPS28-208ENST00000527797 ABHD8Q96I13 439 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 C11orf84Q9BUA3 381 aaPredicted RBP21.98■■□□□ 1.11
VPS28-208ENST00000527797 RBM12Q9NTZ6 932 aaKnown RBP21.98■■□□□ 1.11
VPS28-208ENST00000527797 SLC27A5Q9Y2P5 690 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 ADAM12O43184 909 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 PRPSAP2O60256 369 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 FGF18O76093 207 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 HAPLN1P10915 354 aaPredicted RBP21.98■■□□□ 1.11
VPS28-208ENST00000527797 IL1R2P27930 398 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 SLC25A52Q3SY17 297 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 MGAT5BQ3V5L5 792 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 NUP93Q8N1F7 819 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 RNF25Q96BH1 459 aaPredicted RBP21.98■■□□□ 1.11
VPS28-208ENST00000527797 SEPT5Q99719 369 aaPredicted RBP21.98■■□□□ 1.11
VPS28-208ENST00000527797 CLSTN3Q9BQT9 956 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 TRIM62Q9BVG3 475 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 AP1M1Q9BXS5 423 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 WDR27A2RRH5 827 aa21.97■■□□□ 1.11
VPS28-208ENST00000527797 CCDC188H7C350 402 aa21.97■■□□□ 1.11
VPS28-208ENST00000527797 LINC00271P0C7V0 271 aa21.97■■□□□ 1.11
VPS28-208ENST00000527797 GPR15P49685 360 aa21.97■■□□□ 1.11
VPS28-208ENST00000527797 SULT1E1P49888 294 aa21.97■■□□□ 1.11
VPS28-208ENST00000527797 RPL10AP62906 217 aaKnown RBP21.97■■□□□ 1.11
VPS28-208ENST00000527797 RAB6CQ53S08 254 aa21.97■■□□□ 1.11
VPS28-208ENST00000527797 SCYL2Q6P3W7 929 aa21.97■■□□□ 1.11
VPS28-208ENST00000527797 STRADAQ7RTN6 431 aa21.97■■□□□ 1.11
VPS28-208ENST00000527797 BHLHA9Q7RTU4 235 aa21.97■■□□□ 1.11
VPS28-208ENST00000527797 TTC9BQ8N6N2 239 aa21.97■■□□□ 1.11
VPS28-208ENST00000527797 TBCBQ99426 244 aa21.97■■□□□ 1.11
VPS28-208ENST00000527797 RAB6CQ9H0N0 254 aa21.97■■□□□ 1.11
VPS28-208ENST00000527797 FBXO44Q9H4M3 255 aa21.97■■□□□ 1.11
VPS28-208ENST00000527797 MRPL17Q9NRX2 175 aaKnown RBP21.97■■□□□ 1.11
VPS28-208ENST00000527797 KLHL11Q9NVR0 708 aa21.97■■□□□ 1.11
VPS28-208ENST00000527797 NAALADL1Q9UQQ1 740 aa21.97■■□□□ 1.11
VPS28-208ENST00000527797 NLRC5Q86WI3 1866 aa21.97■■□□□ 1.11
VPS28-208ENST00000527797 GOLGA6L10A0A0M3HER8 536 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 FSCN2O14926 492 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 VNN2O95498 520 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 FYNP06241 537 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 TFE3P19532 575 aaPredicted RBP21.96■■□□□ 1.11
VPS28-208ENST00000527797 COPS2P61201 443 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 IFRD2Q12894 506 aaPredicted RBP21.96■■□□□ 1.11
VPS28-208ENST00000527797 DUSP4Q13115 394 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 ELF2Q15723 593 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 SMTNL2Q2TAL5 461 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 BOLA3Q53S33 107 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 KCNT1Q5JUK3 1230 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 SDHAF4Q5VUM1 108 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 GPR65Q8IYL9 337 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 MAIP1Q8WWC4 291 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 TSC1Q92574 1164 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 NT5C3BQ969T7 300 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 SLITRK1Q96PX8 696 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 NPY6RQ99463 290 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 RRN3Q9NYV6 651 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 MTUS1Q9ULD2 1270 aa21.96■■□□□ 1.11
VPS28-208ENST00000527797 LRRD1A4D1F6 860 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 PI4K2BG5E9Z4 385 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 RARAP10276 462 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 NCAM1P13591 858 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 HDAC4P56524 1084 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 RASIP1Q5U651 963 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 SYPL2Q5VXT5 272 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 BSPRYQ5W0U4 402 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 CCDC70Q6NSX1 233 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 ADAT2Q7Z6V5 191 aaKnown RBP21.95■■□□□ 1.1
VPS28-208ENST00000527797 ZNF461Q8TAF7 563 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 RAPGEF5Q92565 580 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 ACSF2Q96CM8 615 aaPredicted RBP21.95■■□□□ 1.1
VPS28-208ENST00000527797 SPATA17Q96L03 361 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 PEBP4Q96S96 227 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 CRISPLD1Q9H336 500 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 AFF4Q9UHB7 1163 aaKnown RBP21.95■■□□□ 1.1
VPS28-208ENST00000527797 SSX2IPQ9Y2D8 614 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 PTPRSQ13332 1948 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 TUFMP49411 452 aaKnown RBP21.95■■□□□ 1.1
VPS28-208ENST00000527797 TPGS2Q68CL5 300 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 SPOCD1Q6ZMY3 1216 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 BEND5Q7L4P6 421 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 GPR161Q8N6U8 529 aaKnown RBP21.95■■□□□ 1.1
VPS28-208ENST00000527797 KLHL23Q8NBE8 558 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 KCTD6Q8NC69 237 aa21.95■■□□□ 1.1
VPS28-208ENST00000527797 CMASQ8NFW8 434 aaPredicted RBP21.95■■□□□ 1.1
VPS28-208ENST00000527797 OSBPL8Q9BZF1 889 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms