RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SDK1Q7Z5N4 2213 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 OTOL1A6NHN0 477 aaPredicted RBP10.73□□□□□ -0.69
VPS28-204ENST00000526054 SOBPA7XYQ1 873 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 FOXD2O60548 495 aaPredicted RBP10.73□□□□□ -0.69
VPS28-204ENST00000526054 ATG13O75143 517 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 ATP2C2O75185 946 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 NOL4O94818 638 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 CKMP06732 381 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 ARSAP15289 507 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 ZNF18P17022 549 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 PTPN1P18031 435 aaKnown RBP10.73□□□□□ -0.69
VPS28-204ENST00000526054 CYP2F1P24903 491 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 HOXC13P31276 330 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 CYP27A1Q02318 531 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 GCNT1Q02742 428 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 ZNF268Q14587 947 aaPredicted RBP10.73□□□□□ -0.69
VPS28-204ENST00000526054 MTF1Q14872 753 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 PDGFRLQ15198 375 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 CCDC142Q17RM4 750 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 CFAP221Q4G0U5 840 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 MIIPQ5JXC2 388 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 FKBP15Q5T1M5 1219 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 PKN3Q6P5Z2 889 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 TRIM65Q6PJ69 517 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 MON1AQ86VX9 555 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 DHX40Q8IX18 779 aaKnown RBP10.73□□□□□ -0.69
VPS28-204ENST00000526054 CPA6Q8N4T0 437 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 LMO3Q8TAP4 145 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 EXOC4Q96A65 974 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 CHFRQ96EP1 664 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 PCED1BQ96HM7 432 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 ARID3AQ99856 593 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 CRACR2AQ9BSW2 395 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 ELOVL4Q9GZR5 314 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 VPS16Q9H269 839 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 DPEP3Q9H4B8 488 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 CISHQ9NSE2 258 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 HMGXB4Q9UGU5 601 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 LIMA1Q9UHB6 759 aaKnown RBP10.73□□□□□ -0.69
VPS28-204ENST00000526054 SLC8A2Q9UPR5 921 aa10.73□□□□□ -0.69
VPS28-204ENST00000526054 ATG2BQ96BY7 2078 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 TRAV19A0A0A6YYK7 116 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 GOLGA6L19H0YKK7 550 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 TRDMT1O14717 391 aaKnown RBP10.72□□□□□ -0.69
VPS28-204ENST00000526054 SLC30A4O14863 429 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 RNF40O75150 1001 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 RPP40O75818 363 aaKnown RBP10.72□□□□□ -0.69
VPS28-204ENST00000526054 EGFP01133 1207 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 USP17L7P0C7H9 530 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 ANXA13P27216 316 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 MAGEA11P43364 429 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 PXNP49023 591 aaPredicted RBP10.72□□□□□ -0.69
VPS28-204ENST00000526054 COPB1P53618 953 aaKnown RBP10.72□□□□□ -0.69
VPS28-204ENST00000526054 USP4Q13107 963 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 IQCB1Q15051 598 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 ZNF77Q15935 545 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 LRSAM1Q6UWE0 723 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 VSTM1Q6UX27 236 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 ENOSF1Q7L5Y1 443 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 ACOT1Q86TX2 421 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 ARHGEF19Q8IW93 802 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 SCN4BQ8IWT1 228 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 CRYBG2Q8N1P7 616 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 GAB3Q8WWW8 586 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 ATP2A3Q93084 1043 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 MYRFLQ96LU7 910 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 P2RY13Q9BPV8 354 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 MED10Q9BTT4 135 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 TSPY26PQ9H489 355 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 CBX8Q9HC52 389 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 EPG5Q9HCE0 2579 aa10.72□□□□□ -0.69
VPS28-204ENST00000526054 CCDC163A0A0D9SF12 145 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 LGALS16A8MUM7 142 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 TRIM66O15016 1216 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 SLC9A1P19634 815 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 DRD1P21728 446 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 BDNFP23560 247 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 PON1P27169 355 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 GJA4P35212 333 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 IFNAR2P48551 515 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 MFAP3P55082 362 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 ORC1Q13415 861 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 FBXO43Q4G163 708 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 FILIP1LQ4L180 1135 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 AASDHQ4L235 1098 aaPredicted RBP10.71□□□□□ -0.69
VPS28-204ENST00000526054 ZNF394Q53GI3 561 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 PPM1JQ5JR12 505 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 RRAGAQ7L523 313 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 FAM35AQ86V20 835 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 C12orf50Q8NA57 414 aaPredicted RBP10.71□□□□□ -0.69
VPS28-204ENST00000526054 OSCP1Q8WVF1 389 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 JAKMIP2Q96AA8 810 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 SMARCD1Q96GM5 515 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 TMEM176AQ96HP8 235 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 CEP295NLQ96MC4 621 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 CNTNAP3BQ96NU0 1288 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 HHIPQ96QV1 700 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 TWNKQ96RR1 684 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 SLC22A12Q96S37 553 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 CNTNAP3Q9BZ76 1288 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms