RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 CLDN5O00501 218 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 TRIM66O15016 1216 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 COCHO43405 550 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 ZNF217O75362 1048 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 FAM171BQ6P995 826 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 VSTM1Q6UX27 236 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 NUDT18Q6ZVK8 323 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 BRSK2Q8IWQ3 736 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 SYCP3Q8IZU3 236 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 LRRC52Q8N7C0 313 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 KBTBD7Q8WVZ9 684 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 RAD54LQ92698 747 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 FBXO32Q969P5 355 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 HPDLQ96IR7 371 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 TRIM9Q9C026 710 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 SNX25Q9H3E2 840 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 CCSER2Q9H7U1 834 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 MRPL44Q9H9J2 332 aaKnown RBP12.38□□□□□ -0.43
SDCBP-211ENST00000523441 TM7SF3Q9NS93 570 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 BLOC1S4Q9NUP1 217 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 TBC1D14Q9P2M4 693 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 SIX4Q9UIU6 781 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 ITGA11Q9UKX5 1188 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 CDH9Q9ULB4 789 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 FNDC3AQ9Y2H6 1198 aaKnown RBP12.38□□□□□ -0.43
SDCBP-211ENST00000523441 ASXL3Q9C0F0 2248 aa12.38□□□□□ -0.43
SDCBP-211ENST00000523441 TENM4Q6N022 2769 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 A0A0A0MRY4 1105 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 KCNK3O14649 394 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 GABRDO14764 452 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 CILPO75339 1184 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 GCNT3O95395 438 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 OAS1P00973 400 aaKnown RBP12.37□□□□□ -0.43
SDCBP-211ENST00000523441 NCAM1P13591 858 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 YWHAQP27348 245 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 ITPKBP27987 946 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 MATKP42679 507 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 ABCG1P45844 678 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 CLDN6P56747 220 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 MYO1EQ12965 1108 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 POSTNQ15063 836 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 DCAF12L1Q5VU92 463 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 FAM124AQ86V42 546 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 DDX42Q86XP3 938 aaKnown RBP eCLIP12.37□□□□□ -0.43
SDCBP-211ENST00000523441 NT5DC4Q86YG4 428 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 KRI1Q8N9T8 703 aaKnown RBP12.37□□□□□ -0.43
SDCBP-211ENST00000523441 OR5B17Q8NGF7 314 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 OR6B3Q8NGW1 331 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 SLC39A7Q92504 469 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 FOXJ1Q92949 421 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 TOE1Q96GM8 510 aaKnown RBP12.37□□□□□ -0.43
SDCBP-211ENST00000523441 ZNF419Q96HQ0 510 aaPredicted RBP12.37□□□□□ -0.43
SDCBP-211ENST00000523441 ANKRD36BP1Q96IX9 119 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 MRGPRX1Q96LB2 322 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 MRPL45Q9BRJ2 306 aaKnown RBP12.37□□□□□ -0.43
SDCBP-211ENST00000523441 BBS2Q9BXC9 721 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 ZNF518BQ9C0D4 1074 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 DPEP3Q9H4B8 488 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 SCUBE2Q9NQ36 999 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 SPHK2Q9NRA0 654 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 TMEM30AQ9NV96 361 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 GDAP2Q9NXN4 497 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 EHD2Q9NZN4 543 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 BTBD3Q9Y2F9 522 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 STYXL1Q9Y6J8 313 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 PTPRJQ12913 1337 aa12.37□□□□□ -0.43
SDCBP-211ENST00000523441 TP53BP1Q12888 1972 aaPredicted RBP12.36□□□□□ -0.43
SDCBP-211ENST00000523441 MUC22E2RYF6 1773 aaPredicted RBP12.36□□□□□ -0.43
SDCBP-211ENST00000523441 A0A1B0GTW7 788 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 A0A1B0GVT2 93 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 E2F8A0AVK6 867 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 PRRT4C9JH25 899 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 CBFA2T3O75081 653 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 TNNC2P02585 160 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 CD6P30203 668 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 IL9RQ01113 521 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 GRIN1Q05586 938 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 MAPRE1Q15691 268 aaKnown RBP12.36□□□□□ -0.43
SDCBP-211ENST00000523441 HLA-BQ31612 363 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 RILPL1Q5EBL4 403 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 TMPRSS7Q7RTY8 843 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 ZNF720Q7Z2F6 126 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 ETFBKMTQ8IXQ9 262 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 MYCBPAPQ8TBZ2 947 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 LARP4BQ92615 738 aaKnown RBP12.36□□□□□ -0.43
SDCBP-211ENST00000523441 ACCSQ96QU6 501 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 CBWD1Q9BRT8 395 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 MED10Q9BTT4 135 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 TTLL2Q9BWV7 592 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 PLK2Q9NYY3 685 aa12.36□□□□□ -0.43
SDCBP-211ENST00000523441 EIF2B4Q9UI10 523 aaKnown RBP12.36□□□□□ -0.43
SDCBP-211ENST00000523441 CYSRT1A8MQ03 144 aa12.35□□□□□ -0.43
SDCBP-211ENST00000523441 PLK4O00444 970 aa12.35□□□□□ -0.43
SDCBP-211ENST00000523441 C1QL1O75973 258 aa12.35□□□□□ -0.43
SDCBP-211ENST00000523441 CER1O95813 267 aa12.35□□□□□ -0.43
SDCBP-211ENST00000523441 OLFM2O95897 454 aa12.35□□□□□ -0.43
SDCBP-211ENST00000523441 TYRP14679 529 aa12.35□□□□□ -0.43
SDCBP-211ENST00000523441 PFKLP17858 780 aa12.35□□□□□ -0.43
SDCBP-211ENST00000523441 SCP2P22307 547 aa12.35□□□□□ -0.43
SDCBP-211ENST00000523441 GNL1P36915 607 aaPredicted RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms