RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 OBSL1O75147 1896 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 TRIOO75962 3097 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 A0A1W2PQH9 124 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 SART1O43290 800 aaKnown RBP14.99□□□□□ -0.01
NUP54-216ENST00000514901 TLR5O60602 858 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 PRAMEF12O95522 483 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 LSM8O95777 96 aaKnown RBP14.99□□□□□ -0.01
NUP54-216ENST00000514901 LCP1P13796 627 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 FERP16591 822 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 ATP5C1P36542 298 aaKnown RBP14.99□□□□□ -0.01
NUP54-216ENST00000514901 PBX1P40424 430 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 RGS7P49802 495 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 PLCB2Q00722 1185 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 FCHO2Q0JRZ9 810 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 ARHGAP29Q52LW3 1261 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 VITQ6UXI7 678 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 TMEM110Q86TL2 294 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 DDX42Q86XP3 938 aaKnown RBP eCLIP14.99□□□□□ -0.01
NUP54-216ENST00000514901 TMEM35BQ8NCS4 154 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 BPIFB1Q8TDL5 484 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 EPS8L1Q8TE68 723 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 DDX1Q92499 740 aaKnown RBP14.99□□□□□ -0.01
NUP54-216ENST00000514901 IRF7Q92985 503 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 SLC22A12Q96S37 553 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 NACA2Q9H009 215 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 RNF38Q9H0F5 515 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 NUCKS1Q9H1E3 243 aaKnown RBP14.99□□□□□ -0.01
NUP54-216ENST00000514901 ST7Q9NRC1 585 aa14.99□□□□□ -0.01
NUP54-216ENST00000514901 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.99□□□□□ -0.01
NUP54-216ENST00000514901 NUP210Q8TEM1 1887 aaPredicted RBP14.98□□□□□ -0.01
NUP54-216ENST00000514901 A0A1W2PQJ5 194 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 ZNF263O14978 683 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 CHADO15335 359 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 COCHO43405 550 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 MBL2P11226 248 aaPredicted RBP14.98□□□□□ -0.01
NUP54-216ENST00000514901 RARGP13631 454 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 CDH5P33151 784 aaPredicted RBP14.98□□□□□ -0.01
NUP54-216ENST00000514901 YWHAGP61981 247 aaKnown RBP eCLIP14.98□□□□□ -0.01
NUP54-216ENST00000514901 GPC5P78333 572 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 CDR2Q01850 454 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 SIGLEC14Q08ET2 396 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 PDCLQ13371 301 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 CC2D1AQ6P1N0 951 aaPredicted RBP14.98□□□□□ -0.01
NUP54-216ENST00000514901 TRIM72Q6ZMU5 477 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 SCD5Q86SK9 330 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 NOP9Q86U38 636 aaKnown RBP14.98□□□□□ -0.01
NUP54-216ENST00000514901 WDTC1Q8N5D0 677 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 ZNF397Q8NF99 534 aaPredicted RBP14.98□□□□□ -0.01
NUP54-216ENST00000514901 ST13P5Q8NFI4 369 aaPredicted RBP14.98□□□□□ -0.01
NUP54-216ENST00000514901 GOLGA1Q92805 767 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 PPP1R13BQ96KQ4 1090 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 TRIM62Q9BVG3 475 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 XPO4Q9C0E2 1151 aaKnown RBP14.98□□□□□ -0.01
NUP54-216ENST00000514901 MIS12Q9H081 205 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 SMG9Q9H0W8 520 aaKnown RBP14.98□□□□□ -0.01
NUP54-216ENST00000514901 BRD9Q9H8M2 597 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 NMUR1Q9HB89 426 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 TRPV5Q9NQA5 729 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 WNT16Q9UBV4 365 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 DNMT3LQ9UJW3 386 aa14.98□□□□□ -0.01
NUP54-216ENST00000514901 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.98□□□□□ -0.01
NUP54-216ENST00000514901 ITIH6Q6UXX5 1313 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 GABBR2O75899 941 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 CFHP08603 1231 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 GDI1P31150 447 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 PGFP49763 221 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 DAOAP59103 153 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 GOLGA8FQ08AF8 430 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 GOLGA8DPQ0D2H9 430 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 TAF3Q5VWG9 929 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 BSPRYQ5W0U4 402 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 BTBD8Q5XKL5 378 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 TRIM67Q6ZTA4 783 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 GPIHBP1Q8IV16 184 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 PASD1Q8IV76 773 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 MSANTD4Q8NCY6 345 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 SH3RF2Q8TEC5 729 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 BAP1Q92560 729 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 DNASE1L2Q92874 299 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 KHSRPQ92945 711 aaKnown RBP eCLIP14.97□□□□□ -0.017e-7■■■□□ 17.1
NUP54-216ENST00000514901 RSPRY1Q96DX4 576 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 LRRC3BQ96PB8 259 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 TTYH3Q9C0H2 523 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 CCSER2Q9H7U1 834 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 ABCC13Q9NSE7 274 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 OLA1Q9NTK5 396 aaKnown RBP14.97□□□□□ -0.01
NUP54-216ENST00000514901 OSER1Q9NX31 292 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 AIPL1Q9NZN9 384 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 NOCTQ9UK39 431 aaKnown RBP14.97□□□□□ -0.01
NUP54-216ENST00000514901 CCL26Q9Y258 94 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 F5P12259 2224 aa14.97□□□□□ -0.01
NUP54-216ENST00000514901 LEFTY2O00292 366 aa14.96□□□□□ -0.01
NUP54-216ENST00000514901 NARSO43776 548 aaKnown RBP14.96□□□□□ -0.01
NUP54-216ENST00000514901 MMEP08473 750 aa14.96□□□□□ -0.01
NUP54-216ENST00000514901 ARID5AQ03989 594 aa14.96□□□□□ -0.01
NUP54-216ENST00000514901 GRM2Q14416 872 aa14.96□□□□□ -0.01
NUP54-216ENST00000514901 ZNF77Q15935 545 aa14.96□□□□□ -0.01
NUP54-216ENST00000514901 C10orf120Q5SQS8 335 aa14.96□□□□□ -0.01
NUP54-216ENST00000514901 SFMBT2Q5VUG0 894 aa14.96□□□□□ -0.01
NUP54-216ENST00000514901 SARM1Q6SZW1 724 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms