RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 TERB1Q8NA31 727 aa21.62■■□□□ 1.05
SQSTM1-215ENST00000514093 KCNV2Q8TDN2 545 aa21.62■■□□□ 1.05
SQSTM1-215ENST00000514093 ZFRQ96KR1 1074 aaKnown RBP21.62■■□□□ 1.05
SQSTM1-215ENST00000514093 ZNF518BQ9C0D4 1074 aa21.62■■□□□ 1.05
SQSTM1-215ENST00000514093 RAXQ9Y2V3 346 aa21.62■■□□□ 1.05
SQSTM1-215ENST00000514093 SH3BP1Q9Y3L3 701 aa21.62■■□□□ 1.05
SQSTM1-215ENST00000514093 IGSF10Q6WRI0 2623 aa21.62■■□□□ 1.05
SQSTM1-215ENST00000514093 PLXNB3Q9ULL4 1909 aa21.61■■□□□ 1.05
SQSTM1-215ENST00000514093 CLDN5O00501 218 aa21.61■■□□□ 1.05
SQSTM1-215ENST00000514093 TNNC2P02585 160 aa21.61■■□□□ 1.05
SQSTM1-215ENST00000514093 GJB2P29033 226 aa21.61■■□□□ 1.05
SQSTM1-215ENST00000514093 GNL1P36915 607 aaPredicted RBP21.61■■□□□ 1.05
SQSTM1-215ENST00000514093 SLC14A1Q13336 389 aa21.61■■□□□ 1.05
SQSTM1-215ENST00000514093 SLCO6A1Q86UG4 719 aa21.61■■□□□ 1.05
SQSTM1-215ENST00000514093 OR6B3Q8NGW1 331 aa21.61■■□□□ 1.05
SQSTM1-215ENST00000514093 IPO4Q8TEX9 1081 aaKnown RBP21.61■■□□□ 1.05
SQSTM1-215ENST00000514093 DNAJC19Q96DA6 116 aa21.61■■□□□ 1.05
SQSTM1-215ENST00000514093 SNX25Q9H3E2 840 aa21.61■■□□□ 1.05
SQSTM1-215ENST00000514093 DPEP3Q9H4B8 488 aa21.61■■□□□ 1.05
SQSTM1-215ENST00000514093 SPHK2Q9NRA0 654 aa21.61■■□□□ 1.05
SQSTM1-215ENST00000514093 SEL1LQ9UBV2 794 aa21.61■■□□□ 1.05
SQSTM1-215ENST00000514093 PCDHB13Q9Y5F0 798 aa21.61■■□□□ 1.05
SQSTM1-215ENST00000514093 RAD54BQ9Y620 910 aa21.61■■□□□ 1.05
SQSTM1-215ENST00000514093 ZBTB24O43167 697 aaPredicted RBP21.6■■□□□ 1.05
SQSTM1-215ENST00000514093 HOXC11O43248 304 aaPredicted RBP21.6■■□□□ 1.05
SQSTM1-215ENST00000514093 EIF5BO60841 1220 aaKnown RBP21.6■■□□□ 1.05
SQSTM1-215ENST00000514093 ZNF217O75362 1048 aa21.6■■□□□ 1.05
SQSTM1-215ENST00000514093 PRPF6O94906 941 aaKnown RBP21.6■■□□□ 1.05
SQSTM1-215ENST00000514093 IRF1P10914 325 aa21.6■■□□□ 1.05
SQSTM1-215ENST00000514093 YWHAQP27348 245 aa21.6■■□□□ 1.05
SQSTM1-215ENST00000514093 SF3A1Q15459 793 aaKnown RBP21.6■■□□□ 1.05
SQSTM1-215ENST00000514093 CHPFQ8IZ52 775 aa21.6■■□□□ 1.05
SQSTM1-215ENST00000514093 GPD1LQ8N335 351 aa21.6■■□□□ 1.05
SQSTM1-215ENST00000514093 FBXO32Q969P5 355 aa21.6■■□□□ 1.05
SQSTM1-215ENST00000514093 ZNF419Q96HQ0 510 aaPredicted RBP21.6■■□□□ 1.05
SQSTM1-215ENST00000514093 LRIG1Q96JA1 1093 aa21.6■■□□□ 1.05
SQSTM1-215ENST00000514093 CCSER2Q9H7U1 834 aa21.6■■□□□ 1.05
SQSTM1-215ENST00000514093 CD248Q9HCU0 757 aa21.6■■□□□ 1.05
SQSTM1-215ENST00000514093 NDUFS2O75306 463 aa21.59■■□□□ 1.05
SQSTM1-215ENST00000514093 IDEP14735 1019 aa21.59■■□□□ 1.05
SQSTM1-215ENST00000514093 GAP43P17677 238 aa21.59■■□□□ 1.05
SQSTM1-215ENST00000514093 PTPN1P18031 435 aaKnown RBP21.59■■□□□ 1.05
SQSTM1-215ENST00000514093 DUOXA2Q1HG44 320 aa21.59■■□□□ 1.05
SQSTM1-215ENST00000514093 CBWD2Q8IUF1 395 aa21.59■■□□□ 1.05
SQSTM1-215ENST00000514093 NUP93Q8N1F7 819 aa21.59■■□□□ 1.05
SQSTM1-215ENST00000514093 SCAMP5Q8TAC9 235 aa21.59■■□□□ 1.05
SQSTM1-215ENST00000514093 OTUB2Q96DC9 234 aa21.59■■□□□ 1.05
SQSTM1-215ENST00000514093 B3GNT5Q9BYG0 378 aa21.59■■□□□ 1.05
SQSTM1-215ENST00000514093 DNAJC17Q9NVM6 304 aaKnown RBP21.59■■□□□ 1.05
SQSTM1-215ENST00000514093 STARD13Q9Y3M8 1113 aa21.59■■□□□ 1.05
SQSTM1-215ENST00000514093 CST3P01034 146 aaPredicted RBP21.58■■□□□ 1.05
SQSTM1-215ENST00000514093 GRIK2Q13002 908 aa21.58■■□□□ 1.05
SQSTM1-215ENST00000514093 PREPLQ4J6C6 727 aaPredicted RBP21.58■■□□□ 1.05
SQSTM1-215ENST00000514093 HECTD3Q5T447 861 aa21.58■■□□□ 1.05
SQSTM1-215ENST00000514093 GRAMD4Q6IC98 578 aa21.58■■□□□ 1.05
SQSTM1-215ENST00000514093 SDE2Q6IQ49 451 aa21.58■■□□□ 1.05
SQSTM1-215ENST00000514093 NUDT18Q6ZVK8 323 aa21.58■■□□□ 1.05
SQSTM1-215ENST00000514093 MARCH9Q86YJ5 346 aa21.58■■□□□ 1.05
SQSTM1-215ENST00000514093 SETD7Q8WTS6 366 aaKnown RBP21.58■■□□□ 1.05
SQSTM1-215ENST00000514093 KCNK16Q96T55 309 aa21.58■■□□□ 1.05
SQSTM1-215ENST00000514093 FAM124BQ9H5Z6 455 aaPredicted RBP21.58■■□□□ 1.05
SQSTM1-215ENST00000514093 APOBEC2Q9Y235 224 aaKnown RBP21.58■■□□□ 1.05
SQSTM1-215ENST00000514093 PRRT4C9JH25 899 aa21.57■■□□□ 1.04
SQSTM1-215ENST00000514093 GNSP15586 552 aa21.57■■□□□ 1.04
SQSTM1-215ENST00000514093 SYCP2LQ5T4T6 812 aa21.57■■□□□ 1.04
SQSTM1-215ENST00000514093 KIAA1324Q6UXG2 1013 aaKnown RBP21.57■■□□□ 1.04
SQSTM1-215ENST00000514093 TOGARAM2Q6ZUX3 1019 aa21.57■■□□□ 1.04
SQSTM1-215ENST00000514093 SV2BQ7L1I2 683 aa21.57■■□□□ 1.04
SQSTM1-215ENST00000514093 TRAPPC11Q7Z392 1133 aa21.57■■□□□ 1.04
SQSTM1-215ENST00000514093 TRIM9Q9C026 710 aa21.57■■□□□ 1.04
SQSTM1-215ENST00000514093 ELOVL4Q9GZR5 314 aa21.57■■□□□ 1.04
SQSTM1-215ENST00000514093 IL21RQ9HBE5 538 aa21.57■■□□□ 1.04
SQSTM1-215ENST00000514093 CACNA2D2Q9NY47 1150 aa21.57■■□□□ 1.04
SQSTM1-215ENST00000514093 ZNF233A6NK53 670 aa21.56■■□□□ 1.04
SQSTM1-215ENST00000514093 WASH3PC4AMC7 463 aa21.56■■□□□ 1.04
SQSTM1-215ENST00000514093 CBFA2T3O75081 653 aa21.56■■□□□ 1.04
SQSTM1-215ENST00000514093 BMP15O95972 392 aa21.56■■□□□ 1.04
SQSTM1-215ENST00000514093 RRAGBQ5VZM2 374 aa21.56■■□□□ 1.04
SQSTM1-215ENST00000514093 PDZD8Q8NEN9 1154 aa21.56■■□□□ 1.04
SQSTM1-215ENST00000514093 MRGPRX1Q96LB2 322 aa21.56■■□□□ 1.04
SQSTM1-215ENST00000514093 OLFML3Q9NRN5 406 aa21.56■■□□□ 1.04
SQSTM1-215ENST00000514093 STK17AQ9UEE5 414 aa21.56■■□□□ 1.04
SQSTM1-215ENST00000514093 CCDC39Q9UFE4 941 aa21.56■■□□□ 1.04
SQSTM1-215ENST00000514093 SUSD2Q9UGT4 822 aa21.56■■□□□ 1.04
SQSTM1-215ENST00000514093 PCOLCE2Q9UKZ9 415 aa21.56■■□□□ 1.04
SQSTM1-215ENST00000514093 SETXQ7Z333 2677 aaKnown RBP21.55■■□□□ 1.04
SQSTM1-215ENST00000514093 NEDD8-MDP1E9PL57 170 aa21.55■■□□□ 1.04
SQSTM1-215ENST00000514093 TACC1O75410 805 aa21.55■■□□□ 1.04
SQSTM1-215ENST00000514093 RTN3O95197 1032 aaPredicted RBP21.55■■□□□ 1.04
SQSTM1-215ENST00000514093 PGFP49763 221 aa21.55■■□□□ 1.04
SQSTM1-215ENST00000514093 WDR72Q3MJ13 1102 aa21.55■■□□□ 1.04
SQSTM1-215ENST00000514093 WDR45BQ5MNZ6 344 aa21.55■■□□□ 1.04
SQSTM1-215ENST00000514093 TPGS1Q6ZTW0 290 aa21.55■■□□□ 1.04
SQSTM1-215ENST00000514093 RDH13Q8NBN7 331 aa21.55■■□□□ 1.04
SQSTM1-215ENST00000514093 GLIS3Q8NEA6 775 aa21.55■■□□□ 1.04
SQSTM1-215ENST00000514093 FOXJ1Q92949 421 aa21.55■■□□□ 1.04
SQSTM1-215ENST00000514093 GABRG3Q99928 467 aa21.55■■□□□ 1.04
SQSTM1-215ENST00000514093 NACA2Q9H009 215 aa21.55■■□□□ 1.04
SQSTM1-215ENST00000514093 MIR1-1HGQ9H1L0 117 aa21.55■■□□□ 1.04
SQSTM1-215ENST00000514093 GMIPQ9P107 970 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms