RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 ALDH1A3P47895 512 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 WDR72Q3MJ13 1102 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 TMEM119Q4V9L6 283 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 CLNKQ7Z7G1 428 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 EXT2Q93063 718 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 NCLNQ969V3 563 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 POP1Q99575 1024 aaKnown RBP11.63□□□□□ -0.55
TCOF1-211ENST00000513346 TIMMDC1Q9NPL8 285 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 GIMAP4Q9NUV9 329 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 THAP1Q9NVV9 213 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 STAP1Q9ULZ2 295 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 EME2A4GXA9 379 aaPredicted RBP11.63□□□□□ -0.55
TCOF1-211ENST00000513346 ACOT2P49753 483 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 FCGRTP55899 365 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 KYAT1Q16773 422 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 SGSM1Q2NKQ1 1148 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 ANO7Q6IWH7 933 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 LRP10Q7Z4F1 713 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 NAT14Q8WUY8 206 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 ZNF560Q96MR9 790 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 SRPK1Q96SB4 655 aaKnown RBP11.63□□□□□ -0.55
TCOF1-211ENST00000513346 CNGB3Q9NQW8 809 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 KCNH7Q9NS40 1196 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 RIC1Q4ADV7 1423 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 A0A087WXM4 84 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 C1orf232A0A0U1RR37 186 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 KBTBD13C9JR72 458 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 MAGEB2O15479 319 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 TBC1D4O60343 1298 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 MTTPP55157 894 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 PRKCEQ02156 737 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 DMPKQ09013 629 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 PLA2G4FQ68DD2 849 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 XRRA1Q6P2D8 792 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 CCNJLQ8IV13 435 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.63□□□□□ -0.553e-9■■■■■ 78.5
TCOF1-211ENST00000513346 MSH4O15457 936 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 CHKAP35790 457 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 VCPP55072 806 aaKnown RBP11.63□□□□□ -0.55
TCOF1-211ENST00000513346 KHDC1Q4VXA5 237 aaKnown RBP11.63□□□□□ -0.55
TCOF1-211ENST00000513346 ISLR2Q6UXK2 745 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 C4orf22Q6V702 233 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 TRABD2AQ86V40 505 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 ZBTB18Q99592 522 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 NUDT12Q9BQG2 462 aa11.63□□□□□ -0.55
TCOF1-211ENST00000513346 TUBA8Q9NY65 449 aaPredicted RBP11.63□□□□□ -0.55
TCOF1-211ENST00000513346 R3HDM2Q9Y2K5 976 aaKnown RBP11.63□□□□□ -0.55
TCOF1-211ENST00000513346 PYGLP06737 847 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 GALK1P51570 392 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 CDC42EP1Q00587 391 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 USP4Q13107 963 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 FOXR2Q6PJQ5 311 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 FRA10AC1Q70Z53 315 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 CCDC33Q8N5R6 958 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 UPF1Q92900 1129 aaKnown RBP eCLIP11.62□□□□□ -0.55
TCOF1-211ENST00000513346 TAAR1Q96RJ0 339 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 EPAS1Q99814 870 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 TASP1Q9H6P5 420 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 RIOX1Q9H6W3 641 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 ARL8BQ9NVJ2 186 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 DMTF1Q9Y222 760 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 FAM237BA0A1B0GVD1 139 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 ADCY6O43306 1168 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 TLR2O60603 784 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 CCDC166P0CW27 439 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 RALBP11234 206 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 ADORA2BP29275 332 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 CBX3Q13185 183 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 SLC47A2Q86VL8 602 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 IFNEQ86WN2 208 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 ULK2Q8IYT8 1036 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 DRAXINQ8NBI3 349 aaPredicted RBP11.62□□□□□ -0.55
TCOF1-211ENST00000513346 ZNF317Q96PQ6 595 aaPredicted RBP11.62□□□□□ -0.55
TCOF1-211ENST00000513346 SYT17Q9BSW7 474 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 BRD8Q9H0E9 1235 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 DHX35Q9H5Z1 703 aaKnown RBP11.62□□□□□ -0.55
TCOF1-211ENST00000513346 CIDEBQ9UHD4 219 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 SLC8A2Q9UPR5 921 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 ANKRD26Q9UPS8 1709 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 ZMYM2Q9UBW7 1377 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 MANSC4A6NHS7 340 aaPredicted RBP11.62□□□□□ -0.55
TCOF1-211ENST00000513346 E9PBE3 544 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 F8W8V4 182 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 KLHL41O60662 606 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 EMC2Q15006 297 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 KCTD19Q17RG1 926 aaPredicted RBP11.62□□□□□ -0.55
TCOF1-211ENST00000513346 SMTNL2Q2TAL5 461 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 LAYNQ6UX15 382 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 TSPAN14Q8NG11 270 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 LNX1Q8TBB1 728 aaPredicted RBP11.62□□□□□ -0.55
TCOF1-211ENST00000513346 GIPC3Q8TF64 312 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 PGBD4Q96DM1 585 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 ZNF333Q96JL9 665 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 CYLDQ9NQC7 956 aa11.62□□□□□ -0.55
TCOF1-211ENST00000513346 TPST1O60507 370 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 FOLH1Q04609 750 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 PTK2BQ14289 1009 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 GRIK5Q16478 980 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 SPOCD1Q6ZMY3 1216 aa11.61□□□□□ -0.55
TCOF1-211ENST00000513346 FAM83AQ86UY5 434 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms