RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 BPIFB1Q8TDL5 484 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 FAM3CQ92520 227 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 MRPS31Q92665 395 aaKnown RBP8.53□□□□□ -1.04
SCN1A-207ENST00000507401 TAF4BQ92750 862 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 NELL1Q92832 810 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 RSPRY1Q96DX4 576 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 FAM84AQ96KN4 292 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 LRRC3BQ96PB8 259 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 MMS19Q96T76 1030 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 SYT15Q9BQS2 421 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 FAM126AQ9BYI3 521 aaPredicted RBP8.53□□□□□ -1.04
SCN1A-207ENST00000507401 XYLT2Q9H1B5 865 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 SNX25Q9H3E2 840 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 KIF9Q9HAQ2 790 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 TDP1Q9NUW8 608 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 SPATA6Q9NWH7 488 aaPredicted RBP8.53□□□□□ -1.04
SCN1A-207ENST00000507401 FKBPLQ9UIM3 349 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 TRAF3IP3Q9Y228 551 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 PIAS3Q9Y6X2 628 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 WDR87Q6ZQQ6 2873 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 DMDP11532 3685 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 NUP210Q8TEM1 1887 aaPredicted RBP8.53□□□□□ -1.04
SCN1A-207ENST00000507401 RIF1Q5UIP0 2472 aaKnown RBP8.52□□□□□ -1.05
SCN1A-207ENST00000507401 CCDC151A5D8V7 595 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 ERICH4A6NGS2 130 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 SLC38A8A6NNN8 435 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 LAMTOR5O43504 91 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 CALUO43852 315 aaPredicted RBP8.52□□□□□ -1.05
SCN1A-207ENST00000507401 PHACTR2O75167 634 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 ATP2C2O75185 946 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 LRRN2O75325 713 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 ERLIN1O75477 346 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 AP1G2O75843 785 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 ZNF202O95125 648 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 C4BPAP04003 597 aaKnown RBP8.52□□□□□ -1.05
SCN1A-207ENST00000507401 NR3C1P04150 777 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 PDGFRBP09619 1106 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 PTPN1P18031 435 aaKnown RBP8.52□□□□□ -1.05
SCN1A-207ENST00000507401 TARSP26639 723 aaKnown RBP8.52□□□□□ -1.05
SCN1A-207ENST00000507401 PDE6CP51160 858 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 WDR4P57081 412 aaKnown RBP8.52□□□□□ -1.05
SCN1A-207ENST00000507401 MYL6P60660 151 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 ETF1P62495 437 aaKnown RBP8.52□□□□□ -1.05
SCN1A-207ENST00000507401 TNNC1P63316 161 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 AMPD2Q01433 879 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 DPYDQ12882 1025 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 ARID5BQ14865 1188 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 SGSM1Q2NKQ1 1148 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 DGKKQ5KSL6 1271 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 ASCL5Q7RTU5 278 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 SYNPOQ8N3V7 929 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 GUF1Q8N442 669 aaKnown RBP8.52□□□□□ -1.05
SCN1A-207ENST00000507401 KIAA1958Q8N8K9 716 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 FSIP1Q8NA03 581 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 ERCC4Q92889 916 aaPredicted RBP8.52□□□□□ -1.05
SCN1A-207ENST00000507401 C8orf48Q96LL4 319 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 FAM83CQ9BQN1 747 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 CHRDQ9H2X0 955 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 LMAN1LQ9HAT1 526 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 CRTAC1Q9NQ79 661 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 FRMD4BQ9Y2L6 1034 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 JRKLQ9Y4A0 524 aa8.52□□□□□ -1.05
SCN1A-207ENST00000507401 PTPRZ1P23471 2315 aaPredicted RBP8.51□□□□□ -1.05
SCN1A-207ENST00000507401 ZNF292O60281 2723 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 LRRIQ3A6PVS8 624 aaPredicted RBP8.51□□□□□ -1.05
SCN1A-207ENST00000507401 A8MXQ7 604 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 CBFA2T2O43439 604 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 PRAMEF12O95522 483 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 LMNAP02545 664 aaKnown RBP8.51□□□□□ -1.05
SCN1A-207ENST00000507401 USP17L7P0C7H9 530 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 CHRNB1P11230 501 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 P4HA1P13674 534 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 TCF3P15923 654 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 BDNFP23560 247 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 CCNE1P24864 410 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 MCM3P25205 808 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 RPL13P26373 211 aaKnown RBP8.51□□□□□ -1.05
SCN1A-207ENST00000507401 GRIK1P39086 918 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 GPR15P49685 360 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 KPNA1P52294 538 aaPredicted RBP8.51□□□□□ -1.05
SCN1A-207ENST00000507401 NRLP54845 237 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 NOP14P78316 857 aaKnown RBP8.51□□□□□ -1.05
SCN1A-207ENST00000507401 CYP4F8P98187 520 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 NCOA4Q13772 614 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 LRRC32Q14392 662 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 PPP2R5DQ14738 602 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 ITPRIPL2Q3MIP1 535 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 ZACNQ401N2 412 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 ZNF667Q5HYK9 610 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 TDRD10Q5VZ19 366 aaKnown RBP8.51□□□□□ -1.05
SCN1A-207ENST00000507401 TXNDC8Q6A555 127 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 DENND5BQ6ZUT9 1274 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 SCN4BQ8IWT1 228 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 MAB21L3Q8N8X9 362 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 ZBTB44Q8NCP5 570 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 OR6B3Q8NGW1 331 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 PLEKHO2Q8TD55 490 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 USP13Q92995 863 aaPredicted RBP8.51□□□□□ -1.05
SCN1A-207ENST00000507401 ITPKCQ96DU7 683 aa8.51□□□□□ -1.05
SCN1A-207ENST00000507401 PCED1BQ96HM7 432 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms