RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 GTF3C3Q9Y5Q9 886 aa15.25■□□□□ 0.03
HMGCS1-203ENST00000507004 SPAG17Q6Q759 2223 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 SLC30A4O14863 429 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 SLC16A3O15427 465 aaKnown RBP15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 HOXC11O43248 304 aaPredicted RBP15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 TLR5O60602 858 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 CILPO75339 1184 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 CCDC130P13994 396 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 ATP5C1P36542 298 aaKnown RBP15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 TNFRSF4P43489 277 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 MXI1P50539 228 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 MAP3K7CLP57077 242 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 SLC8A3P57103 927 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 FKBP3Q00688 224 aaKnown RBP15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 PPP3CAQ08209 521 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 BYSLQ13895 437 aaKnown RBP15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 USP39Q53GS9 565 aaKnown RBP15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 EOGTQ5NDL2 527 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 C12orf50Q8NA57 414 aaPredicted RBP15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 FBXL13Q8NEE6 735 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 ZMIZ2Q8NF64 920 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 SCAMP5Q8TAC9 235 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 TAS1R2Q8TE23 839 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 TIGD1Q96MW7 591 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.24■□□□□ 0.035e-8■■■■■ 135.3
HMGCS1-203ENST00000507004 C2orf42Q9NWW7 574 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 GMIPQ9P107 970 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 MMP17Q9ULZ9 603 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 MAPK8IP1Q9UQF2 711 aa15.24■□□□□ 0.03
HMGCS1-203ENST00000507004 CACNA1AO00555 2505 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 KAT7O95251 611 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 ZNF806P0C7X5 589 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 TRIM49P0CI25 452 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 TRIM49CP0CI26 452 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 LIMK1P53667 647 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 ATXN1P54253 815 aaKnown RBP15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 YWHAEP62258 255 aaKnown RBP15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 LRRC63Q05C16 580 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 SRSF5Q13243 272 aaKnown RBP15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 STIM1Q13586 685 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 ZNF658Q5TYW1 1059 aaPredicted RBP15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 SPOPLQ6IQ16 392 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 RHBDF2Q6PJF5 856 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 CLEC20AQ6ZU45 233 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 HTR3DQ70Z44 454 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 ELOA2Q8IYF1 753 aaPredicted RBP15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 ARHGAP18Q8N392 663 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 CNOT6LQ96LI5 555 aaKnown RBP15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 HHIPQ96QV1 700 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 UBXN6Q9BZV1 441 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 GOLPH3LQ9H4A5 285 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 POLMQ9NP87 494 aaPredicted RBP15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 ARHGEF4Q9NR80 690 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 FAM49BQ9NUQ9 324 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 RAB20Q9NX57 234 aa15.23■□□□□ 0.03
HMGCS1-203ENST00000507004 ATG2BQ96BY7 2078 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 K7EQS6 105 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 RALAP11233 206 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 ADORA2BP29275 332 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 DPP6P42658 865 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 PLA2G4AP47712 749 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 E2F5Q15329 346 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 CRY1Q16526 586 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 GAB4Q2WGN9 574 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 LY6G5CQ5SRR4 150 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 RASSF3Q86WH2 238 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 FMR1NBQ8N0W7 255 aaPredicted RBP15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 C12orf29Q8N999 325 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 EZH1Q92800 747 aaPredicted RBP15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 SMARCE1Q969G3 411 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 ZFRQ96KR1 1074 aaKnown RBP15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 XPO6Q96QU8 1125 aaKnown RBP15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 DUSP16Q9BY84 665 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 CCSER2Q9H7U1 834 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 APOBEC3GQ9HC16 384 aaKnown RBP15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 METTL14Q9HCE5 456 aaKnown RBP15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 SPHK2Q9NRA0 654 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 VPS45Q9NRW7 570 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 CLIC5Q9NZA1 410 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 WDR35Q9P2L0 1181 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 DEC1Q9P2X7 70 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 ZNF510Q9Y2H8 683 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 RALGAPA1Q6GYQ0 2036 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 MYH10P35580 1976 aa15.22■□□□□ 0.03
HMGCS1-203ENST00000507004 ZBTB24O43167 697 aaPredicted RBP15.21■□□□□ 0.03
HMGCS1-203ENST00000507004 ACO1P21399 889 aaKnown RBP15.21■□□□□ 0.03
HMGCS1-203ENST00000507004 PXNP49023 591 aaPredicted RBP15.21■□□□□ 0.03
HMGCS1-203ENST00000507004 KIF11P52732 1056 aa15.21■□□□□ 0.03
HMGCS1-203ENST00000507004 PLK5Q496M5 336 aa15.21■□□□□ 0.03
HMGCS1-203ENST00000507004 C2orf27AQ580R0 203 aa15.21■□□□□ 0.03
HMGCS1-203ENST00000507004 CCDC186Q7Z3E2 898 aa15.21■□□□□ 0.03
HMGCS1-203ENST00000507004 MMRN2Q9H8L6 949 aa15.21■□□□□ 0.03
HMGCS1-203ENST00000507004 MARK1Q9P0L2 795 aa15.21■□□□□ 0.03
HMGCS1-203ENST00000507004 HMGXB4Q9UGU5 601 aa15.21■□□□□ 0.03
HMGCS1-203ENST00000507004 DNMT3LQ9UJW3 386 aa15.21■□□□□ 0.03
HMGCS1-203ENST00000507004 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.2■□□□□ 0.02
HMGCS1-203ENST00000507004 TBC1D3BA6NDS4 549 aa15.2■□□□□ 0.02
HMGCS1-203ENST00000507004 PSMA7O14818 248 aa15.2■□□□□ 0.02
HMGCS1-203ENST00000507004 BEST1O76090 585 aa15.2■□□□□ 0.02
HMGCS1-203ENST00000507004 CD58P19256 250 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms