RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 JOSD2Q8TAC2 188 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 NPLOC4Q8TAT6 608 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 CCT8L2Q96SF2 557 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 C20orf96Q9NUD7 363 aaPredicted RBP14.62□□□□□ -0.07
TCOF1-207ENST00000504761 RGS20O76081 388 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 C22orf31O95567 290 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 S100BP04271 92 aaPredicted RBP14.62□□□□□ -0.07
TCOF1-207ENST00000504761 RPLP2P05387 115 aaKnown RBP14.62□□□□□ -0.07
TCOF1-207ENST00000504761 IRAK1P51617 712 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 KPNA2P52292 529 aaKnown RBP14.62□□□□□ -0.07
TCOF1-207ENST00000504761 SDHAF4Q5VUM1 108 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 B3GALNT2Q8NCR0 500 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 RPS6KL1Q9Y6S9 549 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 SIGLEC16A6NMB1 481 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 LSP1P33241 339 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 PTPN20Q4JDL3 420 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 GIPC2Q8TF65 315 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 DDX23Q9BUQ8 820 aaKnown RBP14.62□□□□□ -0.07
TCOF1-207ENST00000504761 SIX2Q9NPC8 291 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 NNMTP40261 264 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 MMRN1Q13201 1228 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 TADA2BQ86TJ2 420 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 PRELID2Q8N945 189 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 TSEN2Q8NCE0 465 aaKnown RBP14.62□□□□□ -0.07
TCOF1-207ENST00000504761 SMARCD1Q96GM5 515 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 CFLARO15519 480 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 FBXO21O94952 628 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 ESRRAP11474 423 aaPredicted RBP14.61□□□□□ -0.07
TCOF1-207ENST00000504761 CASP2P42575 452 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 BTG3Q14201 252 aaPredicted RBP14.61□□□□□ -0.07
TCOF1-207ENST00000504761 NPNTQ6UXI9 565 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 STAMBPL1Q96FJ0 436 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 PPP1R36Q96LQ0 422 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 DMAP1Q9NPF5 467 aaPredicted RBP14.61□□□□□ -0.07
TCOF1-207ENST00000504761 GTSE1Q9NYZ3 720 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 KANSL3Q9P2N6 904 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 LSM7Q9UK45 103 aaKnown RBP14.61□□□□□ -0.07
TCOF1-207ENST00000504761 TOGARAM1Q9Y4F4 1720 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 PTPRN2Q92932 1015 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 CPXM1Q96SM3 734 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 COG5Q9UP83 839 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 TXNDC9O14530 226 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 DIAPH2O60879 1101 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 DUSP11O75319 330 aaKnown RBP14.61□□□□□ -0.07
TCOF1-207ENST00000504761 ANO4Q32M45 955 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 SLC10A6Q3KNW5 377 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 TTC8Q8TAM2 541 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 ZNF516Q92618 1163 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 WHRNQ9P202 907 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 PADI3Q9ULW8 664 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 SH3BP1Q9Y3L3 701 aa14.61□□□□□ -0.07
TCOF1-207ENST00000504761 TRIM49D1C9J1S8 452 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 MSCO60682 206 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 PECAM1P16284 738 aaPredicted RBP14.6□□□□□ -0.07
TCOF1-207ENST00000504761 HABP4Q5JVS0 413 aaKnown RBP14.6□□□□□ -0.07
TCOF1-207ENST00000504761 NDUFAF2Q8N183 169 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 HES6Q96HZ4 224 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 XPO6Q96QU8 1125 aaKnown RBP14.6□□□□□ -0.07
TCOF1-207ENST00000504761 FOXP3Q9BZS1 431 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 FAM47DPA6NHR8 397 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 LTFP02788 710 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 KDELR1P24390 212 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 TMEM63BQ5T3F8 832 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 ELMSAN1Q6PJG2 1045 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 UNC93AQ86WB7 457 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 NDRG1Q92597 394 aaKnown RBP14.6□□□□□ -0.07
TCOF1-207ENST00000504761 RAB3IPQ96QF0 476 aaPredicted RBP14.6□□□□□ -0.07
TCOF1-207ENST00000504761 ZNF446Q9NWS9 450 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.6□□□□□ -0.07
TCOF1-207ENST00000504761 PCDHB5Q9Y5E4 795 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 HOXA2O43364 376 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 URODP06132 367 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 POLBP06746 335 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 NPR3P17342 541 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 KRT4P19013 534 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 USP10Q14694 798 aaKnown RBP14.6□□□□□ -0.07
TCOF1-207ENST00000504761 KCNT2Q6UVM3 1135 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 LRRC6Q86X45 466 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 IFNL1Q8IU54 200 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 PPHLN1Q8NEY8 458 aaKnown RBP14.6□□□□□ -0.07
TCOF1-207ENST00000504761 SCG3Q8WXD2 468 aaKnown RBP14.6□□□□□ -0.07
TCOF1-207ENST00000504761 FGFR1OP2Q9NVK5 253 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 MID2Q9UJV3 735 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 CCDC160A6NGH7 325 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 E5RI56 91 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 PIAS1O75925 651 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 JAM2P57087 298 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 C9orf57Q5W0N0 161 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 TTC30AQ86WT1 665 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 PHF13Q86YI8 300 aaPredicted RBP14.6□□□□□ -0.07
TCOF1-207ENST00000504761 PDCD7Q8N8D1 485 aaKnown RBP14.6□□□□□ -0.07
TCOF1-207ENST00000504761 ATP6V0D2Q8N8Y2 350 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 PWWP2AQ96N64 755 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 ELOVL4Q9GZR5 314 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 MTIF3Q9H2K0 278 aaKnown RBP14.6□□□□□ -0.07
TCOF1-207ENST00000504761 CACNG4Q9UBN1 327 aa14.6□□□□□ -0.07
TCOF1-207ENST00000504761 EIF3HO15372 352 aaKnown RBP eCLIP14.59□□□□□ -0.075e-6■■■□□ 14.9
TCOF1-207ENST00000504761 CYBBP04839 570 aa14.59□□□□□ -0.07
TCOF1-207ENST00000504761 RBL1P28749 1068 aa14.59□□□□□ -0.07
TCOF1-207ENST00000504761 SSTR1P30872 391 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms