RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 DGCR2P98153 550 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 TNFAIP2Q03169 654 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 PPARAQ07869 468 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 BFSP2Q13515 415 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 TUBA3CQ13748 450 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 PWP2Q15269 919 aaKnown RBP4.6□□□□□ -1.67
USP54-217ENST00000498213 SEPT7Q16181 437 aaKnown RBP4.6□□□□□ -1.67
USP54-217ENST00000498213 LPAL2Q16609 132 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 ATP13A4Q4VNC1 1196 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 TMEM63BQ5T3F8 832 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 TUBA3EQ6PEY2 450 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 FRMD7Q6ZUT3 714 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 KIAA0907Q7Z7F0 614 aaPredicted RBP4.6□□□□□ -1.67
USP54-217ENST00000498213 TICAM2Q86XR7 235 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 AMOTL1Q8IY63 956 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 TEX11Q8IYF3 940 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 UNC5BQ8IZJ1 945 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 CMTM4Q8IZR5 234 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 MAGEB6Q8N7X4 407 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 GAB3Q8WWW8 586 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 SUSD6Q92537 303 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 GPR87Q9BY21 358 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 RAI14Q9P0K7 980 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 HMG20BQ9P0W2 317 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 PNMA2Q9UL42 364 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 NOP58Q9Y2X3 529 aaKnown RBP4.6□□□□□ -1.67
USP54-217ENST00000498213 NOC2LQ9Y3T9 749 aaKnown RBP4.6□□□□□ -1.67
USP54-217ENST00000498213 TENM4Q6N022 2769 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 COL4A3Q01955 1670 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 TET1Q8NFU7 2136 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 MYO9AB2RTY4 2548 aa4.6□□□□□ -1.67
USP54-217ENST00000498213 KRTAP23-1A1A580 65 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 MTSS1O43312 755 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 ZEB2O60315 1214 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 NBNO60934 754 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 TOP3BO95985 862 aaKnown RBP4.59□□□□□ -1.67
USP54-217ENST00000498213 ADH4P08319 380 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 MYL3P08590 195 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 PLA2G2AP14555 144 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 FLT1P17948 1338 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 CAMK1Q14012 370 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 SPIDRQ14159 915 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 FHL2Q14192 279 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 TERF2Q15554 542 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 RALGAPA2Q2PPJ7 1873 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 COL28A1Q2UY09 1125 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 ZBTB41Q5SVQ8 909 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 IL31Q6EBC2 164 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 FAM43BQ6ZT52 329 aaPredicted RBP4.59□□□□□ -1.67
USP54-217ENST00000498213 TMEM179Q6ZVK1 233 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 TLK2Q86UE8 772 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 CXorf67Q86X51 503 aaPredicted RBP4.59□□□□□ -1.67
USP54-217ENST00000498213 TMPRSS6Q8IU80 811 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 GLB1L2Q8IW92 636 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 ELOA2Q8IYF1 753 aaPredicted RBP4.59□□□□□ -1.67
USP54-217ENST00000498213 OR5M3Q8NGP4 307 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 ZNF483Q8TF39 744 aaPredicted RBP4.59□□□□□ -1.67
USP54-217ENST00000498213 CACTINQ8WUQ7 758 aaKnown RBP4.59□□□□□ -1.67
USP54-217ENST00000498213 SLC5A5Q92911 643 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 PGBD4Q96DM1 585 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 ZNF512Q96ME7 567 aaPredicted RBP4.59□□□□□ -1.67
USP54-217ENST00000498213 ZNF287Q9HBT7 754 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 EMC7Q9NPA0 242 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 MAPRE3Q9UPY8 281 aa4.59□□□□□ -1.67
USP54-217ENST00000498213 TMA7Q9Y2S6 64 aaKnown RBP4.59□□□□□ -1.67
USP54-217ENST00000498213 DDX49Q9Y6V7 483 aaKnown RBP4.59□□□□□ -1.67
USP54-217ENST00000498213 LOC400499M0QZD8 3231 aa4.59□□□□□ -1.68
USP54-217ENST00000498213 SIP14410 1827 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 ZNF236Q9UL36 1845 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 GSG1L2A8MUP6 293 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 GOLGA6L6A8MZA4 724 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 CCER2I3L3R5 266 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 ATP2A1O14983 1001 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 WDR46O15213 610 aaKnown RBP4.58□□□□□ -1.68
USP54-217ENST00000498213 FLOT1O75955 427 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 CLSTN1O94985 981 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 GAAP10253 952 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 MAKP20794 623 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 DNAJB1P25685 340 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 BMPR1AP36894 532 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 GPR15P49685 360 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 OAZ1P54368 228 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 TIMM10P62072 90 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 ADAM8P78325 824 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 DUSP2Q05923 314 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 MGAT5Q09328 741 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 ABCB5Q2M3G0 1257 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 CERKLQ49MI3 558 aaPredicted RBP4.58□□□□□ -1.68
USP54-217ENST00000498213 CCDC178Q5BJE1 867 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 CT47A1Q5JQC4 288 aaPredicted RBP4.58□□□□□ -1.68
USP54-217ENST00000498213 KIAA1755Q5JYT7 1200 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 BROXQ5VW32 411 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 CCDC62Q6P9F0 684 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 Q6ZRM9 215 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 LRRC8DQ7L1W4 858 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 ARMCX2Q7L311 632 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 VN1R2Q8NFZ6 395 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 KLHDC4Q8TBB5 520 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 SSH3Q8TE77 659 aa4.58□□□□□ -1.68
USP54-217ENST00000498213 ATRIPQ8WXE1 791 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms