RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 DUSP16Q9BY84 665 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 PNPLA8Q9NP80 782 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 POLR3BQ9NW08 1133 aaPredicted RBP13.46□□□□□ -0.25
PTPRF-214ENST00000496043 ANAPC1Q9H1A4 1944 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 PTPRDP23468 1912 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 KIF26AQ9ULI4 1882 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-214ENST00000496043 A0A0A0MRY4 1105 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 HHLA1C9JL84 531 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 SCAMP3O14828 347 aaKnown RBP13.45□□□□□ -0.26
PTPRF-214ENST00000496043 AXIN1O15169 862 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 SLC16A3O15427 465 aaKnown RBP13.45□□□□□ -0.26
PTPRF-214ENST00000496043 TLR5O60602 858 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 RPP40O75818 363 aaKnown RBP13.45□□□□□ -0.26
PTPRF-214ENST00000496043 APODP05090 189 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 CCDC192P0DO97 292 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 ADH5P11766 374 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 EIF2DP41214 584 aaKnown RBP13.45□□□□□ -0.26
PTPRF-214ENST00000496043 PPP1R2P41236 205 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 MRPS21P82921 87 aaKnown RBP13.45□□□□□ -0.26
PTPRF-214ENST00000496043 LMNB2Q03252 620 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 LRRC63Q05C16 580 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 GAB4Q2WGN9 574 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 PREPLQ4J6C6 727 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-214ENST00000496043 C2orf27AQ580R0 203 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 LY6G5CQ5SRR4 150 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 PPP1R26Q5T8A7 1209 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-214ENST00000496043 BTBD8Q5XKL5 378 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 HTR3DQ70Z44 454 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 DGLUCYQ7Z3D6 616 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 FAM160A2Q8N612 972 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-214ENST00000496043 USP33Q8TEY7 942 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 ERCC4Q92889 916 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-214ENST00000496043 JAKMIP2Q96AA8 810 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 TMEM176AQ96HP8 235 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 DHTKD1Q96HY7 919 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-214ENST00000496043 LOXL4Q96JB6 756 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 ZFRQ96KR1 1074 aaKnown RBP13.45□□□□□ -0.26
PTPRF-214ENST00000496043 DUSP9Q99956 384 aaKnown RBP13.45□□□□□ -0.26
PTPRF-214ENST00000496043 KLF16Q9BXK1 252 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-214ENST00000496043 UBXN6Q9BZV1 441 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 FAM124BQ9H5Z6 455 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-214ENST00000496043 PARD6AQ9NPB6 346 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 CISHQ9NSE2 258 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 DLL3Q9NYJ7 618 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 EBF1Q9UH73 591 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 VPS13AQ96RL7 3174 aa13.45□□□□□ -0.26
PTPRF-214ENST00000496043 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.44□□□□□ -0.26
PTPRF-214ENST00000496043 PSMA7O14818 248 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 APBB3O95704 486 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 TBX18O95935 607 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 GRIA2P42262 883 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 TNFRSF4P43489 277 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 PLA2G4AP47712 749 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 PGFP49763 221 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 PSEN1P49768 467 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 KIF11P52732 1056 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 PMS1P54277 932 aaKnown RBP13.44□□□□□ -0.26
PTPRF-214ENST00000496043 SEC13P55735 322 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 GOLGA8FQ08AF8 430 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 GOLGA8DPQ0D2H9 430 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 DCAF17Q5H9S7 520 aaPredicted RBP13.44□□□□□ -0.26
PTPRF-214ENST00000496043 ISM2Q6H9L7 571 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 NUDT18Q6ZVK8 323 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 GPRIN1Q7Z2K8 1008 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 ZC3H3Q8IXZ2 948 aaKnown RBP13.44□□□□□ -0.26
PTPRF-214ENST00000496043 HHIPQ96QV1 700 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 METTL14Q9HCE5 456 aaKnown RBP13.44□□□□□ -0.26
PTPRF-214ENST00000496043 CYLDQ9NQC7 956 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 SPHK2Q9NRA0 654 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 ARMCX3Q9UH62 379 aaPredicted RBP13.44□□□□□ -0.26
PTPRF-214ENST00000496043 COQ4Q9Y3A0 265 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 CFAP54Q96N23 3096 aa13.44□□□□□ -0.26
PTPRF-214ENST00000496043 A0A1W2PQH9 124 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 FOXD2O60548 495 aaPredicted RBP13.43□□□□□ -0.26
PTPRF-214ENST00000496043 KAT7O95251 611 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 IRF1P10914 325 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 RALAP11233 206 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 RARGP13631 454 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 DGKEP52429 567 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 RAD23BP54727 409 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 SLC8A3P57103 927 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 YWHAEP62258 255 aaKnown RBP13.43□□□□□ -0.26
PTPRF-214ENST00000496043 CSRP2Q16527 193 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 ANO4Q32M45 955 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 HSF5Q4G112 596 aaPredicted RBP13.43□□□□□ -0.26
PTPRF-214ENST00000496043 CBWD6Q4V339 395 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 CBWD3Q5JTY5 395 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 CBWD5Q5RIA9 395 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 ARHGAP17Q68EM7 881 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 KLHDC10Q6PID8 442 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 TADA2BQ86TJ2 420 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 KBTBD6Q86V97 674 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 TMEM25Q86YD3 366 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 BBS7Q8IWZ6 715 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 ZNF276Q8N554 614 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 CCDC33Q8N5R6 958 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 NAT16Q8N8M0 369 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 SLC4A11Q8NBS3 891 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 TSTD1Q8NFU3 115 aa13.43□□□□□ -0.26
PTPRF-214ENST00000496043 ARHGEF4Q9NR80 690 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms