RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	CILP2	Q8IUL8	1156 aa		4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	NME8	Q8N427	588 aa		4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	SPPL3	Q8TCT6	385 aa		4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	POF1B	Q8WVV4	589 aa		4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	ESR2	Q92731	530 aa		4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	PGBD4	Q96DM1	585 aa		4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	RAX2	Q96IS3	184 aa		4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	TNIP3	Q96KP6	325 aa		4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	SAMD11	Q96NU1	681 aa		4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	INPP4A	Q96PE3	977 aa	Predicted RBP	4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	IWS1	Q96ST2	819 aa		4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	YME1L1	Q96TA2	773 aa		4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	TBCB	Q99426	244 aa		4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	MYL10	Q9BUA6	226 aa		4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	RNF41	Q9H4P4	317 aa	Predicted RBP	4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	ERVK-5	Q9HDB9	667 aa		4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	MAD2L2	Q9UI95	211 aa		4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	RAX	Q9Y2V3	346 aa		4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	AKAP13	Q12802	2813 aa		4.81	□□□□□ -1.64
VPS52-222	ENST00000495981	TTC3	P53804	2025 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	ADGRA3	Q8IWK6	1321 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	BAZ2B	Q9UIF8	2168 aa	Known RBP	4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	CCDC154	A6NI56	674 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	C1QTNF9B	B2RNN3	333 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	RASA4B	C9J798	803 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	RASA4	O43374	803 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	GGPS1	O95749	300 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	MMP1	P03956	469 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	AMH	P03971	560 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	NTRK1	P04629	796 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	PARP1	P09874	1014 aa	Known RBP	4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	C1QTNF9	P0C862	333 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	SMIM10L2A	P0DMW4	78 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	SMIM10L2B	P0DMW5	78 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	GLUL	P15104	373 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	CAST	P20810	708 aa	Known RBP	4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	HTR1B	P28222	390 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	HOXA13	P31271	388 aa	Predicted RBP	4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	GJA4	P35212	333 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	PIK3CB	P42338	1070 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	CHRNA4	P43681	627 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	SLC6A11	P48066	632 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	SARS	P49591	514 aa	Known RBP	4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	PRIM2	P49643	509 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	SLC5A3	P53794	718 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	CORO7	P57737	925 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	NUCB1	Q02818	461 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	MVK	Q03426	396 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	MGAT3	Q09327	533 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	DUSP4	Q13115	394 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	KCNC3	Q14003	757 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	GRM4	Q14833	912 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	STXBP2	Q15833	593 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	CELF3	Q5SZQ8	465 aa	Known RBP	4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	ANKRD45	Q5TZF3	282 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	BTBD8	Q5XKL5	378 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	RNF43	Q68DV7	783 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	LRSAM1	Q6UWE0	723 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	STOX1	Q6ZVD7	989 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	CHST3	Q7LGC8	479 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	IQCA1	Q86XH1	822 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	PHYKPL	Q8IUZ5	450 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	LZTR1	Q8N653	840 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	C7orf31	Q8N865	590 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	AUTS2	Q8WXX7	1259 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	CCDC138	Q96M89	665 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	CRB3	Q9BUF7	120 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	POMK	Q9H5K3	350 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	BCAS3	Q9H6U6	928 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	KAT14	Q9H8E8	782 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	IFT122	Q9HBG6	1241 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	RIC8B	Q9NVN3	520 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	STOML1	Q9UBI4	398 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	ASH2L	Q9UBL3	628 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	DPP7	Q9UHL4	492 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	SORCS3	Q9UPU3	1222 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	MORC2	Q9Y6X9	1032 aa	Predicted RBP	4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	CACNA1I	Q9P0X4	2223 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	SPTA1	P02549	2419 aa		4.8	□□□□□ -1.64
VPS52-222	ENST00000495981	PRAMEF25	A6NGN4	478 aa		4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	GOLGA6L22	H0YM25	854 aa		4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	KRIT1	O00522	736 aa		4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	ZNF213	O14771	459 aa		4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	ZBTB5	O15062	677 aa		4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	PRPF6	O94906	941 aa	Known RBP	4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	PRL	P01236	227 aa		4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	RB1	P06400	928 aa		4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	PROS1	P07225	676 aa		4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	GLI4	P10075	376 aa		4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	MTHFD2	P13995	350 aa		4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	PEX2	P28328	305 aa		4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	CCND2	P30279	289 aa		4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	WAS	P42768	502 aa		4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	LGALS4	P56470	323 aa		4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	ANTXR2	P58335	489 aa		4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	IRX6	P78412	446 aa	Predicted RBP	4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	DSC2	Q02487	901 aa		4.79	□□□□□ -1.64
VPS52-222	ENST00000495981	TROAP	Q12815	778 aa		4.79	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms