RNA–Protein interactions for RNA: ENST00000494464.5

ERCC3-209, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 1 (best)

Gene ERCC3, Length 1,367 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-209ENST00000494464 ZBTB44Q8NCP5 570 aa13.94□□□□□ -0.18
ERCC3-209ENST00000494464 NELFBQ8WX92 580 aa13.94□□□□□ -0.18
ERCC3-209ENST00000494464 ARID3AQ99856 593 aa13.94□□□□□ -0.18
ERCC3-209ENST00000494464 RNF38Q9H0F5 515 aa13.94□□□□□ -0.18
ERCC3-209ENST00000494464 ECT2Q9H8V3 914 aa13.94□□□□□ -0.18
ERCC3-209ENST00000494464 RRAGDQ9NQL2 400 aaPredicted RBP13.94□□□□□ -0.18
ERCC3-209ENST00000494464 CISHQ9NSE2 258 aa13.94□□□□□ -0.18
ERCC3-209ENST00000494464 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.94□□□□□ -0.18
ERCC3-209ENST00000494464 CTNND2Q9UQB3 1225 aa13.94□□□□□ -0.18
ERCC3-209ENST00000494464 CPQQ9Y646 472 aa13.94□□□□□ -0.18
ERCC3-209ENST00000494464 R4GN57 208 aa13.94□□□□□ -0.18
ERCC3-209ENST00000494464 HHLA1C9JL84 531 aa13.93□□□□□ -0.18
ERCC3-209ENST00000494464 COCHO43405 550 aa13.93□□□□□ -0.18
ERCC3-209ENST00000494464 CBFA2T2O43439 604 aa13.93□□□□□ -0.18
ERCC3-209ENST00000494464 NFATC1O95644 943 aa13.93□□□□□ -0.18
ERCC3-209ENST00000494464 ABL1P00519 1130 aa13.93□□□□□ -0.18
ERCC3-209ENST00000494464 ZNF18P17022 549 aa13.93□□□□□ -0.18
ERCC3-209ENST00000494464 GJA4P35212 333 aa13.93□□□□□ -0.18
ERCC3-209ENST00000494464 CLCN1P35523 988 aa13.93□□□□□ -0.18
ERCC3-209ENST00000494464 FMO5P49326 533 aa13.93□□□□□ -0.18
ERCC3-209ENST00000494464 MARSP56192 900 aaKnown RBP13.93□□□□□ -0.18
ERCC3-209ENST00000494464 CSTF1Q05048 431 aaKnown RBP13.93□□□□□ -0.18
ERCC3-209ENST00000494464 CUL2Q13617 745 aa13.93□□□□□ -0.18
ERCC3-209ENST00000494464 CCDC40Q4G0X9 1142 aa13.93□□□□□ -0.18
ERCC3-209ENST00000494464 HECTD3Q5T447 861 aa13.93□□□□□ -0.18
ERCC3-209ENST00000494464 TATDN2Q93075 761 aa13.93□□□□□ -0.18
ERCC3-209ENST00000494464 EXOC4Q96A65 974 aa13.93□□□□□ -0.18
ERCC3-209ENST00000494464 ZFRQ96KR1 1074 aaKnown RBP13.93□□□□□ -0.18
ERCC3-209ENST00000494464 RBM12Q9NTZ6 932 aaKnown RBP13.93□□□□□ -0.18
ERCC3-209ENST00000494464 ZSCAN32Q9NX65 697 aa13.93□□□□□ -0.18
ERCC3-209ENST00000494464 GMIPQ9P107 970 aa13.93□□□□□ -0.18
ERCC3-209ENST00000494464 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.93□□□□□ -0.18
ERCC3-209ENST00000494464 SLC9A3R1O14745 358 aaPredicted RBP13.92□□□□□ -0.18
ERCC3-209ENST00000494464 P4HA2O15460 535 aa13.92□□□□□ -0.18
ERCC3-209ENST00000494464 ZNF500O60304 480 aaPredicted RBP13.92□□□□□ -0.18
ERCC3-209ENST00000494464 GNA14O95837 355 aa13.92□□□□□ -0.18
ERCC3-209ENST00000494464 LMNAP02545 664 aaKnown RBP13.92□□□□□ -0.18
ERCC3-209ENST00000494464 MBL2P11226 248 aaPredicted RBP13.92□□□□□ -0.18
ERCC3-209ENST00000494464 TBXAS1P24557 533 aaPredicted RBP13.92□□□□□ -0.18
ERCC3-209ENST00000494464 RAD23BP54727 409 aa13.92□□□□□ -0.18
ERCC3-209ENST00000494464 YWHAEP62258 255 aaKnown RBP13.92□□□□□ -0.18
ERCC3-209ENST00000494464 FANCCQ00597 558 aa13.92□□□□□ -0.18
ERCC3-209ENST00000494464 GRSF1Q12849 480 aaKnown RBP eCLIP13.92□□□□□ -0.18
ERCC3-209ENST00000494464 ZNF394Q53GI3 561 aa13.92□□□□□ -0.18
ERCC3-209ENST00000494464 PPP1R26Q5T8A7 1209 aaPredicted RBP13.92□□□□□ -0.18
ERCC3-209ENST00000494464 ARHGAP17Q68EM7 881 aa13.92□□□□□ -0.18
ERCC3-209ENST00000494464 FSTL4Q6MZW2 842 aa13.92□□□□□ -0.18
ERCC3-209ENST00000494464 Q6ZS52 159 aa13.92□□□□□ -0.18
ERCC3-209ENST00000494464 GPRIN1Q7Z2K8 1008 aa13.92□□□□□ -0.18
ERCC3-209ENST00000494464 SLC4A11Q8NBS3 891 aa13.92□□□□□ -0.18
ERCC3-209ENST00000494464 TTC16Q8NEE8 873 aa13.92□□□□□ -0.18
ERCC3-209ENST00000494464 TMEM176AQ96HP8 235 aa13.92□□□□□ -0.18
ERCC3-209ENST00000494464 DUSP16Q9BY84 665 aa13.92□□□□□ -0.18
ERCC3-209ENST00000494464 TLR8Q9NR97 1041 aaKnown RBP13.92□□□□□ -0.18
ERCC3-209ENST00000494464 IMPACTQ9P2X3 320 aa13.92□□□□□ -0.18
ERCC3-209ENST00000494464 SCML2Q9UQR0 700 aa13.92□□□□□ -0.18
ERCC3-209ENST00000494464 NFE2L3Q9Y4A8 694 aa13.92□□□□□ -0.18
ERCC3-209ENST00000494464 LILRB5O75023 590 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 DRD1P21728 446 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 CXCL12P48061 93 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 NRLP54845 237 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 SATB1Q01826 763 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 NR1H3Q13133 447 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 TSSK4Q6SA08 328 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 TRIM59Q8IWR1 403 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 DRC7Q8IY82 874 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 UBR7Q8N806 425 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 SPC24Q8NBT2 197 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 MED15Q96RN5 788 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 P2RY13Q9BPV8 354 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 CCSER2Q9H7U1 834 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 CYLDQ9NQC7 956 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 FANCLQ9NW38 375 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 SMPD4Q9NXE4 827 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 IFNKQ9P0W0 207 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 CFAP97Q9P2B7 532 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 CHORDC1Q9UHD1 332 aaPredicted RBP13.91□□□□□ -0.18
ERCC3-209ENST00000494464 RWDD2AQ9UIY3 292 aa13.91□□□□□ -0.18
ERCC3-209ENST00000494464 E2F8A0AVK6 867 aa13.9□□□□□ -0.18
ERCC3-209ENST00000494464 TLR5O60602 858 aa13.9□□□□□ -0.18
ERCC3-209ENST00000494464 ACO1P21399 889 aaKnown RBP13.9□□□□□ -0.18
ERCC3-209ENST00000494464 PSEN1P49768 467 aa13.9□□□□□ -0.18
ERCC3-209ENST00000494464 KIF11P52732 1056 aa13.9□□□□□ -0.18
ERCC3-209ENST00000494464 CETN1Q12798 172 aa13.9□□□□□ -0.18
ERCC3-209ENST00000494464 FBXO43Q4G163 708 aa13.9□□□□□ -0.18
ERCC3-209ENST00000494464 CCDC186Q7Z3E2 898 aa13.9□□□□□ -0.18
ERCC3-209ENST00000494464 ATRIPQ8WXE1 791 aa13.9□□□□□ -0.18
ERCC3-209ENST00000494464 CD101Q93033 1021 aa13.9□□□□□ -0.18
ERCC3-209ENST00000494464 JAKMIP2Q96AA8 810 aa13.9□□□□□ -0.18
ERCC3-209ENST00000494464 OTUB2Q96DC9 234 aa13.9□□□□□ -0.18
ERCC3-209ENST00000494464 HEXIM2Q96MH2 286 aaKnown RBP13.9□□□□□ -0.18
ERCC3-209ENST00000494464 NT5C1BQ96P26 610 aa13.9□□□□□ -0.18
ERCC3-209ENST00000494464 XPO4Q9C0E2 1151 aaKnown RBP13.9□□□□□ -0.18
ERCC3-209ENST00000494464 LINC00597Q9H2U6 94 aa13.9□□□□□ -0.18
ERCC3-209ENST00000494464 TBC1D14Q9P2M4 693 aa13.9□□□□□ -0.18
ERCC3-209ENST00000494464 USP3Q9Y6I4 520 aa13.9□□□□□ -0.18
ERCC3-209ENST00000494464 ZFHX2Q9C0A1 2572 aaPredicted RBP13.9□□□□□ -0.18
ERCC3-209ENST00000494464 K7ESF4 209 aa13.89□□□□□ -0.19
ERCC3-209ENST00000494464 CYP26A1O43174 497 aa13.89□□□□□ -0.19
ERCC3-209ENST00000494464 FGFR1OPO95684 399 aaKnown RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms