RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 SPATA31D4Q6ZUB0 917 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 H1FNTQ75WM6 255 aaPredicted RBP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 RALYLQ86SE5 291 aaKnown RBP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 FAM83AQ86UY5 434 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 DIS3L2Q8IYB7 885 aaKnown RBP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 TMEM151AQ8N4L1 468 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 TTC30BQ8N4P2 665 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 SHCBP1Q8NEM2 672 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 ZNF668Q96K58 619 aaPredicted RBP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 ZMAT2Q96NC0 199 aaKnown RBP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 USP44Q9H0E7 712 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 C12orf65Q9H3J6 166 aaKnown RBP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 NSUN3Q9H649 340 aaKnown RBP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 NTMQ9P121 344 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 NFKBIL1Q9UBC1 381 aaPredicted RBP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 TEX51A0A1B0GUA7 166 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 PABPN1LA6NDY0 278 aaKnown RBP5.17□□□□□ -1.58
VPS13A-212ENST00000493341 SEPT4O43236 478 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 DHHO43323 396 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 ANP32CO43423 234 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 HSPA1AP0DMV8 641 aaKnown RBP5.17□□□□□ -1.58
VPS13A-212ENST00000493341 HSPA1BP0DMV9 641 aaKnown RBP5.17□□□□□ -1.58
VPS13A-212ENST00000493341 VDRP11473 427 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 GATMP50440 423 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 CHN2P52757 468 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 MPP3Q13368 585 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 ARHGAP40Q5TG30 622 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 ANO7Q6IWH7 933 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 RINLQ6ZS11 566 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 RASGRP2Q7LDG7 609 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 GALNT4Q8N4A0 578 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 KLHL36Q8N4N3 616 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 ANKRD44Q8N8A2 993 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 FAM71DQ8N9W8 422 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 MBD3L2Q8NHZ7 208 aaPredicted RBP5.17□□□□□ -1.58
VPS13A-212ENST00000493341 KTI12Q96EK9 354 aaPredicted RBP5.17□□□□□ -1.58
VPS13A-212ENST00000493341 LRIG1Q96JA1 1093 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 NUDT22Q9BRQ3 303 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 ZCCHC17Q9NP64 241 aaKnown RBP5.17□□□□□ -1.58
VPS13A-212ENST00000493341 MRGBPQ9NV56 204 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 SEPT11Q9NVA2 429 aaKnown RBP5.17□□□□□ -1.58
VPS13A-212ENST00000493341 VSX1Q9NZR4 365 aaPredicted RBP5.17□□□□□ -1.58
VPS13A-212ENST00000493341 VPS51Q9UID3 782 aa5.17□□□□□ -1.58
VPS13A-212ENST00000493341 CNOT7Q9UIV1 285 aaKnown RBP5.17□□□□□ -1.58
VPS13A-212ENST00000493341 CCDC78A2IDD5 438 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 AGPSO00116 658 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 PEX12O00623 359 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 GNAT2P19087 354 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 ITGALP20701 1170 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 TGM1P22735 817 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 ARL3P36405 182 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 ZEB1P37275 1124 aaPredicted RBP5.16□□□□□ -1.58
VPS13A-212ENST00000493341 MLH1P40692 756 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 ADAM17P78536 824 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 MAMLD1Q13495 774 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 CSRP2Q16527 193 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 RGS7BPQ6MZT1 257 aaPredicted RBP5.16□□□□□ -1.58
VPS13A-212ENST00000493341 MSANTD2Q6P1R3 559 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.16□□□□□ -1.58
VPS13A-212ENST00000493341 TRABD2AQ86V40 505 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 ZFPM1Q8IX07 1006 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 C11orf44Q8N8P7 122 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 FSIP1Q8NA03 581 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 TXNDC5Q8NBS9 432 aaKnown RBP5.16□□□□□ -1.58
VPS13A-212ENST00000493341 CREB3L4Q8TEY5 395 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 BORCS6Q96GS4 357 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 SLF1Q9BQI6 1058 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 PTDSS2Q9BVG9 487 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 EPB41L4BQ9H329 900 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 NDRG4Q9ULP0 352 aaKnown RBP5.16□□□□□ -1.58
VPS13A-212ENST00000493341 NFU1Q9UMS0 254 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 PCDHB7Q9Y5E2 793 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 PIAS3Q9Y6X2 628 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 CCDC195A0A1B0GUA6 201 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 hCG_1807616A0A1W2PRN6 198 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 PORP16435 677 aaPredicted RBP5.16□□□□□ -1.58
VPS13A-212ENST00000493341 DCTN2Q13561 401 aaKnown RBP5.16□□□□□ -1.58
VPS13A-212ENST00000493341 NFYCQ13952 458 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 CCNIQ14094 377 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 NFIXQ14938 502 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 WTAPQ15007 396 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 SEC23BQ15437 767 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 UBXN11Q5T124 520 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 FAM111BQ6SJ93 734 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 SLC22A25Q6T423 547 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 DOK3Q7L591 496 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 SLC15A3Q8IY34 581 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 EIF3CQ99613 913 aaKnown RBP5.16□□□□□ -1.58
VPS13A-212ENST00000493341 ZCWPW1Q9H0M4 648 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 SLC25A18Q9H1K4 315 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 AGO3Q9H9G7 860 aaKnown RBP5.16□□□□□ -1.58
VPS13A-212ENST00000493341 VEZTQ9HBM0 779 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 PLSCR4Q9NRQ2 329 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 PCDHGB4Q9UN71 923 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 PSAT1Q9Y617 370 aa5.16□□□□□ -1.58
VPS13A-212ENST00000493341 ZNF503-AS2A6NEH8 195 aa5.15□□□□□ -1.58
VPS13A-212ENST00000493341 ADM5C9JUS6 153 aa5.15□□□□□ -1.58
VPS13A-212ENST00000493341 TNPO2O14787 897 aaKnown RBP5.15□□□□□ -1.58
VPS13A-212ENST00000493341 SGPL1O95470 568 aa5.15□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms