RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 NOMO1Q15155 1222 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 SOWAHAQ2M3V2 549 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 LCLAT1Q6UWP7 414 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 USP50Q70EL3 339 aaPredicted RBP12.98□□□□□ -0.33
HMGN1-220ENST00000492280 PARP9Q8IXQ6 854 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 ATP11CQ8NB49 1132 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 MAML3Q96JK9 1138 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 TTC25Q96NG3 672 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 NFKBIZQ9BYH8 718 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 DHX35Q9H5Z1 703 aaKnown RBP12.98□□□□□ -0.33
HMGN1-220ENST00000492280 ETNK2Q9NVF9 386 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 WDR35Q9P2L0 1181 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 ITGA11Q9UKX5 1188 aa12.98□□□□□ -0.33
HMGN1-220ENST00000492280 MRPL42Q9Y6G3 142 aaKnown RBP12.98□□□□□ -0.33
HMGN1-220ENST00000492280 TCRBV9S1A1TA0A576 114 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 MAGEB2O15479 319 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 HDAC4P56524 1084 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 GEMIN4P57678 1058 aaKnown RBP12.97□□□□□ -0.33
HMGN1-220ENST00000492280 IL9RQ01113 521 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 SOX4Q06945 474 aaPredicted RBP12.97□□□□□ -0.33
HMGN1-220ENST00000492280 BMPR2Q13873 1038 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 MTFR1Q15390 333 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 TAZQ16635 292 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 CTAGE3PQ8IX95 158 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 PDIK1LQ8N165 341 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 CCDC185Q8N715 623 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 TCP10LQ8TDR4 215 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 DENND1AQ8TEH3 1009 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 PTPRN2Q92932 1015 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 ERP27Q96DN0 273 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 SGSM3Q96HU1 749 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 MS4A4AQ96JQ5 239 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 PCDH18Q9HCL0 1135 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 DCTN4Q9UJW0 460 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 NUMBLQ9Y6R0 609 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 C2orf71A6NGG8 1288 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 MEIS3P2A8K0S8 358 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 CLDN5O00501 218 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 SDC4P31431 198 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 EFHC2Q5JST6 749 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 HHATQ5VTY9 493 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 ZNF449Q6P9G9 518 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 PPP1R21Q6ZMI0 780 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 FAM131BQ86XD5 332 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 UNC5BQ8IZJ1 945 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 SERAC1Q96JX3 654 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 RNF157Q96PX1 679 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 RSAD1Q9HA92 442 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 VTA1Q9NP79 307 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 CPA4Q9UI42 421 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 NUP205Q92621 2012 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 CXorf49A8MYA2 514 aaPredicted RBP12.97□□□□□ -0.33
HMGN1-220ENST00000492280 TYROBPO43914 113 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 TARSP26639 723 aaKnown RBP12.97□□□□□ -0.33
HMGN1-220ENST00000492280 TKTP29401 623 aaKnown RBP12.97□□□□□ -0.33
HMGN1-220ENST00000492280 ATICP31939 592 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 BCAR1P56945 870 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 CRADDP78560 199 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 FAAP100Q0VG06 881 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 XRCC4Q13426 336 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 MPP5Q8N3R9 675 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 DCAKDQ8WVC6 231 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 MYLK2Q9H1R3 596 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 CYP3A43Q9HB55 503 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 NPHS2Q9NP85 383 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 ARL2BPQ9Y2Y0 163 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 C2CD2Q9Y426 696 aa12.97□□□□□ -0.33
HMGN1-220ENST00000492280 ZBED1O96006 694 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 KRT16P08779 473 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 RNASELQ05823 741 aaKnown RBP12.96□□□□□ -0.33
HMGN1-220ENST00000492280 SLC10A2Q12908 348 aaPredicted RBP12.96□□□□□ -0.33
HMGN1-220ENST00000492280 ACVR2BQ13705 512 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 SPARCL1Q14515 664 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 CCL14Q16627 93 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 LDLRAD1Q5T700 205 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 TP53INP2Q8IXH6 220 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 PPM1NQ8N819 430 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 TTC13Q8NBP0 860 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 SLC2A14Q8TDB8 520 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 FAM149B1Q96BN6 582 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 SNX27Q96L92 541 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 PTPN18Q99952 460 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 ACSS3Q9H6R3 686 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 USP29Q9HBJ7 922 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 SLC5A4Q9NY91 659 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 IL1RAPL1Q9NZN1 696 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 KLHL14Q9P2G3 628 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 L3MBTL1Q9Y468 752 aa12.96□□□□□ -0.33
HMGN1-220ENST00000492280 TREHO43280 583 aa12.96□□□□□ -0.34
HMGN1-220ENST00000492280 DNAJC8O75937 253 aaPredicted RBP12.96□□□□□ -0.34
HMGN1-220ENST00000492280 SMIM10L2AP0DMW4 78 aa12.96□□□□□ -0.34
HMGN1-220ENST00000492280 SMIM10L2BP0DMW5 78 aa12.96□□□□□ -0.34
HMGN1-220ENST00000492280 GHRP10912 638 aa12.96□□□□□ -0.34
HMGN1-220ENST00000492280 CYP2C9P11712 490 aa12.96□□□□□ -0.34
HMGN1-220ENST00000492280 GRM5P41594 1212 aa12.96□□□□□ -0.34
HMGN1-220ENST00000492280 MSH2P43246 934 aa12.96□□□□□ -0.34
HMGN1-220ENST00000492280 AFF1P51825 1210 aaKnown RBP12.96□□□□□ -0.34
HMGN1-220ENST00000492280 CCNA1P78396 465 aa12.96□□□□□ -0.34
HMGN1-220ENST00000492280 PTK7Q13308 1070 aa12.96□□□□□ -0.34
HMGN1-220ENST00000492280 OLIG2Q13516 323 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms