RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 PPEF2O14830 753 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 TOM1L1O75674 476 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 GRIK1P39086 918 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 CCT2P78371 535 aaKnown RBP12.35□□□□□ -0.43
HDAC6-233ENST00000489352 MYL7Q01449 175 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 KRT32Q14532 448 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 ZBTB6Q15916 424 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 FAM124AQ86V42 546 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 CATSPER3Q86XQ3 398 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 DCBLD1Q8N8Z6 715 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 C1orf216Q8TAB5 229 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 OTUB2Q96DC9 234 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 SIPA1Q96FS4 1042 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 PSMG3-AS1Q96PY0 264 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 PHF12Q96QT6 1004 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 TSPAN18Q96SJ8 248 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 PCED1AQ9H1Q7 454 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 TM9SF3Q9HD45 589 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 KMT5AQ9NQR1 393 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 RBM19Q9Y4C8 960 aaKnown RBP12.35□□□□□ -0.43
HDAC6-233ENST00000489352 MYH11P35749 1972 aa12.35□□□□□ -0.43
HDAC6-233ENST00000489352 TTC26A0AVF1 554 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 LACTBL1A8MY62 500 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 KCNJ18B7U540 433 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 CPLX1O14810 134 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 PAPSS1O43252 624 aaPredicted RBP12.34□□□□□ -0.43
HDAC6-233ENST00000489352 SYNCRIPO60506 623 aaKnown RBP12.34□□□□□ -0.43
HDAC6-233ENST00000489352 MT-CO3P00414 261 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 XBP1P17861 261 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 SLC7A9P82251 487 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 E2F1Q01094 437 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 C9orf57Q5W0N0 161 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 WSCD1Q658N2 575 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 SPATA2LQ8IUW3 424 aaPredicted RBP12.34□□□□□ -0.43
HDAC6-233ENST00000489352 FAM26EQ8N5C1 309 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 XPO6Q96QU8 1125 aaKnown RBP12.34□□□□□ -0.43
HDAC6-233ENST00000489352 ACE2Q9BYF1 805 aaPredicted RBP12.34□□□□□ -0.43
HDAC6-233ENST00000489352 CD248Q9HCU0 757 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 ABCB6Q9NP58 842 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 OSGEPQ9NPF4 335 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 TMLHEQ9NVH6 421 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 DNAJC17Q9NVM6 304 aaKnown RBP12.34□□□□□ -0.43
HDAC6-233ENST00000489352 HSPBP1Q9NZL4 362 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 EHD2Q9NZN4 543 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 KCNJ14Q9UNX9 436 aa12.34□□□□□ -0.43
HDAC6-233ENST00000489352 A0A1B0GTQ1 180 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 SPATA31C1P0DKV0 1188 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 MBL2P11226 248 aaPredicted RBP12.33□□□□□ -0.44
HDAC6-233ENST00000489352 CKMT2P17540 419 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 CTSKP43235 329 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 NPTX2P47972 431 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 TAF6P49848 677 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 INSM1Q01101 510 aaPredicted RBP12.33□□□□□ -0.44
HDAC6-233ENST00000489352 KYAT1Q16773 422 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 ZSCAN23Q3MJ62 389 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 FUT11Q495W5 492 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 SPATA1Q5VX52 437 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 LAYNQ6UX15 382 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 TMPRSS6Q8IU80 811 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 ETFBKMTQ8IXQ9 262 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 NSUN7Q8NE18 718 aaKnown RBP12.33□□□□□ -0.44
HDAC6-233ENST00000489352 ERMNQ8TAM6 284 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 VCPIP1Q96JH7 1222 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 NCOA5Q9HCD5 579 aaKnown RBP12.33□□□□□ -0.44
HDAC6-233ENST00000489352 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.33□□□□□ -0.44
HDAC6-233ENST00000489352 HCN2Q9UL51 889 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 SH3BP1Q9Y3L3 701 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 ICE1Q9Y2F5 2266 aa12.33□□□□□ -0.44
HDAC6-233ENST00000489352 LRBAP50851 2863 aa12.32□□□□□ -0.44
HDAC6-233ENST00000489352 WASH3PC4AMC7 463 aa12.32□□□□□ -0.44
HDAC6-233ENST00000489352 YKT6O15498 198 aa12.32□□□□□ -0.44
HDAC6-233ENST00000489352 HOXC11O43248 304 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-233ENST00000489352 USP12O75317 370 aa12.32□□□□□ -0.44
HDAC6-233ENST00000489352 MED24O75448 989 aa12.32□□□□□ -0.44
HDAC6-233ENST00000489352 RBMS1P29558 406 aaKnown RBP12.32□□□□□ -0.44
HDAC6-233ENST00000489352 LSSP48449 732 aa12.32□□□□□ -0.44
HDAC6-233ENST00000489352 PPP3CCP48454 512 aa12.32□□□□□ -0.44
HDAC6-233ENST00000489352 ZNF132P52740 706 aa12.32□□□□□ -0.44
HDAC6-233ENST00000489352 NPY5RQ15761 445 aa12.32□□□□□ -0.44
HDAC6-233ENST00000489352 ADCK5Q3MIX3 580 aa12.32□□□□□ -0.44
HDAC6-233ENST00000489352 LEO1Q8WVC0 666 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-233ENST00000489352 RFFLQ8WZ73 363 aa12.32□□□□□ -0.44
HDAC6-233ENST00000489352 ELF4Q99607 663 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-233ENST00000489352 RNF38Q9H0F5 515 aa12.32□□□□□ -0.44
HDAC6-233ENST00000489352 POLR1BQ9H9Y6 1135 aa12.32□□□□□ -0.44
HDAC6-233ENST00000489352 SPHK2Q9NRA0 654 aa12.32□□□□□ -0.44
HDAC6-233ENST00000489352 PCDHB1Q9Y5F3 818 aa12.32□□□□□ -0.44
HDAC6-233ENST00000489352 NUMA1Q14980 2115 aa12.32□□□□□ -0.44
HDAC6-233ENST00000489352 NBASA2RRP1 2371 aa12.32□□□□□ -0.44
HDAC6-233ENST00000489352 ABLIM1O14639 778 aa12.31□□□□□ -0.44
HDAC6-233ENST00000489352 TRIM24O15164 1050 aa12.31□□□□□ -0.44
HDAC6-233ENST00000489352 DXOO77932 396 aaKnown RBP12.31□□□□□ -0.44
HDAC6-233ENST00000489352 IGHDP01880 384 aa12.31□□□□□ -0.44
HDAC6-233ENST00000489352 ANXA13P27216 316 aa12.31□□□□□ -0.44
HDAC6-233ENST00000489352 ARRB1P49407 418 aaPredicted RBP12.31□□□□□ -0.44
HDAC6-233ENST00000489352 PDIA5Q14554 519 aa12.31□□□□□ -0.44
HDAC6-233ENST00000489352 PRAMEF14Q5SWL7 426 aa12.31□□□□□ -0.44
HDAC6-233ENST00000489352 HIST2H2BCQ6DN03 193 aa12.31□□□□□ -0.44
HDAC6-233ENST00000489352 CPLX2Q6PUV4 134 aaKnown RBP12.31□□□□□ -0.44
HDAC6-233ENST00000489352 USP53Q70EK8 1073 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms