RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 C3orf70A6NLC5 250 aaPredicted RBP12.72□□□□□ -0.37
HDAC6-230ENST00000488543 TBKBP1A7MCY6 615 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 KIAA0355O15063 1070 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 GPD1P21695 349 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 PTPN7P35236 360 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 ZNF143P52747 638 aaPredicted RBP12.72□□□□□ -0.37
HDAC6-230ENST00000488543 PLTPP55058 493 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 DEFB103AP81534 67 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 TAF5Q15542 800 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 RAB6CQ53S08 254 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 SPOCD1Q6ZMY3 1216 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 PAQR9Q6ZVX9 377 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 POLNQ7Z5Q5 900 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 FUKQ8N0W3 1084 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 OTUD6BQ8N6M0 293 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 MAIP1Q8WWC4 291 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 RXFP2Q8WXD0 754 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 ATG4AQ8WYN0 398 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 RBM41Q96IZ5 413 aaKnown RBP12.72□□□□□ -0.37
HDAC6-230ENST00000488543 TNIP3Q96KP6 325 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 HNRNPABQ99729 332 aaKnown RBP12.72□□□□□ -0.37
HDAC6-230ENST00000488543 RAB6CQ9H0N0 254 aa12.72□□□□□ -0.37
HDAC6-230ENST00000488543 UTP11Q9Y3A2 253 aaKnown RBP12.72□□□□□ -0.37
HDAC6-230ENST00000488543 TLDC2A0PJX2 215 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 DPYSL4O14531 572 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 PARNO95453 639 aaKnown RBP12.71□□□□□ -0.37
HDAC6-230ENST00000488543 PTPN1P18031 435 aaKnown RBP12.71□□□□□ -0.37
HDAC6-230ENST00000488543 BCAR1P56945 870 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 SLC6A3Q01959 620 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 CNKSR3Q6P9H4 555 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 DCLRE1AQ6PJP8 1040 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 OTOP2Q7RTS6 562 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 CNPY4Q8N129 248 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.71□□□□□ -0.37
HDAC6-230ENST00000488543 SLCO2A1Q92959 643 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 RUNDC3BQ96NL0 473 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 FAM193BQ96PV7 902 aaPredicted RBP12.71□□□□□ -0.37
HDAC6-230ENST00000488543 B3GNT5Q9BYG0 378 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 RAB17Q9H0T7 212 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 FAM114A2Q9NRY5 505 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 DDX43Q9NXZ2 648 aaKnown RBP12.71□□□□□ -0.37
HDAC6-230ENST00000488543 DDX56Q9NY93 547 aaKnown RBP12.71□□□□□ -0.37
HDAC6-230ENST00000488543 SLC12A6Q9UHW9 1150 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 TANC1Q9C0D5 1861 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 CDH23Q9H251 3354 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 GRAP2O75791 330 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 KIAA0754O94854 1291 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 CPP00450 1065 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 KRT10P13645 584 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 MIPP30301 263 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 CDKN2BP42772 138 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 ACAP1Q15027 740 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 SH3PXD2AQ5TCZ1 1133 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 MFSD5Q6N075 450 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 CYP4V2Q6ZWL3 525 aaPredicted RBP12.71□□□□□ -0.37
HDAC6-230ENST00000488543 C16orf59Q7L2K0 433 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 TMEM173Q86WV6 379 aaPredicted RBP12.71□□□□□ -0.37
HDAC6-230ENST00000488543 SCUBE3Q8IX30 993 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 RSPH1Q8WYR4 309 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 LRRC45Q96CN5 670 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 PEBP4Q96S96 227 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 CNPY3Q9BT09 278 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 CRTAC1Q9NQ79 661 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 KANSL3Q9P2N6 904 aa12.71□□□□□ -0.37
HDAC6-230ENST00000488543 hCG_1818297A0A087WSY0 165 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 CLDN5O00501 218 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 NRP1O14786 923 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 HNRNPH1P31943 449 aaKnown RBP12.7□□□□□ -0.38
HDAC6-230ENST00000488543 RABGGTBP53611 331 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 DRG2P55039 364 aaKnown RBP12.7□□□□□ -0.38
HDAC6-230ENST00000488543 COPS2P61201 443 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 IFFO1Q0D2I5 559 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 SNX1Q13596 522 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 TAZQ16635 292 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 C15orf59Q2T9L4 293 aaPredicted RBP12.7□□□□□ -0.38
HDAC6-230ENST00000488543 CCDC14Q49A88 953 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 ICE2Q659A1 982 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 NPAS4Q8IUM7 802 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 TMEM86AQ8N2M4 240 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 CLEC4CQ8WTT0 213 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 B3GALT6Q96L58 329 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 RTP3Q9BQQ7 232 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 EPB41L4BQ9H329 900 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 ZWILCHQ9H900 591 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 CYLDQ9NQC7 956 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 ZDHHC18Q9NUE0 388 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 GRHL1Q9NZI5 618 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 MYBPHLA2RUH7 354 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 H0YHG0 523 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 TRUB2O95900 331 aaKnown RBP12.7□□□□□ -0.38
HDAC6-230ENST00000488543 PDGFRAP16234 1089 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 SYN1P17600 705 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 SLCO1A2P46721 670 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 SMTNL2Q2TAL5 461 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 ZDHHC24Q6UX98 284 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 CCDC105Q8IYK2 499 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 FBXO25Q8TCJ0 367 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 TMEM209Q96SK2 561 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 FMO2Q99518 471 aa12.7□□□□□ -0.38
HDAC6-230ENST00000488543 DNAI2Q9GZS0 605 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms