RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 HSPA12BQ96MM6 686 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 SLC6A17Q9H1V8 727 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 CCSER2Q9H7U1 834 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 EHD2Q9NZN4 543 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 TBC1D14Q9P2M4 693 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 STARD13Q9Y3M8 1113 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 PCDHB13Q9Y5F0 798 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 CLIC4Q9Y696 253 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 A0A1W2PQD8 194 aa16.32■□□□□ 0.2
MCF2L-228ENST00000487354 TBC1D3BA6NDS4 549 aa16.32■□□□□ 0.2
MCF2L-228ENST00000487354 CST3P01034 146 aaPredicted RBP16.32■□□□□ 0.2
MCF2L-228ENST00000487354 ZDHHC11BP0C7U3 371 aa16.32■□□□□ 0.2
MCF2L-228ENST00000487354 FTH1P19P0C7X4 201 aa16.32■□□□□ 0.2
MCF2L-228ENST00000487354 ATXN3P54252 364 aaPredicted RBP16.32■□□□□ 0.2
MCF2L-228ENST00000487354 IFRD2Q12894 506 aaPredicted RBP16.32■□□□□ 0.2
MCF2L-228ENST00000487354 SNX30Q5VWJ9 437 aa16.32■□□□□ 0.2
MCF2L-228ENST00000487354 TDRD10Q5VZ19 366 aaKnown RBP16.32■□□□□ 0.2
MCF2L-228ENST00000487354 TRAPPC11Q7Z392 1133 aa16.32■□□□□ 0.2
MCF2L-228ENST00000487354 WDR49Q8IV35 697 aa16.32■□□□□ 0.2
MCF2L-228ENST00000487354 TRIML1Q8N9V2 468 aa16.32■□□□□ 0.2
MCF2L-228ENST00000487354 OTUB2Q96DC9 234 aa16.32■□□□□ 0.2
MCF2L-228ENST00000487354 ERLEC1Q96DZ1 483 aa16.32■□□□□ 0.2
MCF2L-228ENST00000487354 P2RY11Q96G91 374 aa16.32■□□□□ 0.2
MCF2L-228ENST00000487354 CLIC6Q96NY7 704 aa16.32■□□□□ 0.2
MCF2L-228ENST00000487354 SLITRK1Q96PX8 696 aa16.32■□□□□ 0.2
MCF2L-228ENST00000487354 ELOVL4Q9GZR5 314 aa16.32■□□□□ 0.2
MCF2L-228ENST00000487354 SPHK2Q9NRA0 654 aa16.32■□□□□ 0.2
MCF2L-228ENST00000487354 IL37Q9NZH6 218 aa16.32■□□□□ 0.2
MCF2L-228ENST00000487354 CYP8B1Q9UNU6 501 aa16.32■□□□□ 0.2
MCF2L-228ENST00000487354 TP53BP1Q12888 1972 aaPredicted RBP16.31■□□□□ 0.2
MCF2L-228ENST00000487354 CBFA2T3O75081 653 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 TNNC2P02585 160 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 PTPN1P18031 435 aaKnown RBP16.31■□□□□ 0.2
MCF2L-228ENST00000487354 NTSR1P30989 418 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 GNL1P36915 607 aaPredicted RBP16.31■□□□□ 0.2
MCF2L-228ENST00000487354 ALCAMQ13740 583 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 TRIP6Q15654 476 aaKnown RBP16.31■□□□□ 0.2
MCF2L-228ENST00000487354 DUOXA2Q1HG44 320 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 COL28A1Q2UY09 1125 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 C8orf34Q49A92 452 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 CCNI2Q6ZMN8 369 aaPredicted RBP16.31■□□□□ 0.2
MCF2L-228ENST00000487354 PAQR9Q6ZVX9 377 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 HS2ST1Q7LGA3 356 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 TRMT11Q7Z4G4 463 aaKnown RBP16.31■□□□□ 0.2
MCF2L-228ENST00000487354 BRAPQ7Z569 592 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 RABEPKQ7Z6M1 372 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 PDZD3Q86UT5 571 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 SYCP3Q8IZU3 236 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 PNPLA1Q8N8W4 532 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 SCAMP5Q8TAC9 235 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 IPO4Q8TEX9 1081 aaKnown RBP16.31■□□□□ 0.2
MCF2L-228ENST00000487354 OVCA2Q8WZ82 227 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 HPS3Q969F9 1004 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 ZNF419Q96HQ0 510 aaPredicted RBP16.31■□□□□ 0.2
MCF2L-228ENST00000487354 BBC3Q96PG8 261 aaPredicted RBP16.31■□□□□ 0.2
MCF2L-228ENST00000487354 KCNK16Q96T55 309 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 MMS19Q96T76 1030 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 GABRG3Q99928 467 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 DEC1Q9P2X7 70 aa16.31■□□□□ 0.2
MCF2L-228ENST00000487354 FAM92AA1XBS5 289 aa16.3■□□□□ 0.2
MCF2L-228ENST00000487354 PRRT4C9JH25 899 aa16.3■□□□□ 0.2
MCF2L-228ENST00000487354 IDEP14735 1019 aa16.3■□□□□ 0.2
MCF2L-228ENST00000487354 YWHAQP27348 245 aa16.3■□□□□ 0.2
MCF2L-228ENST00000487354 SLC14A1Q13336 389 aa16.3■□□□□ 0.2
MCF2L-228ENST00000487354 HNRNPDQ14103 355 aaKnown RBP16.3■□□□□ 0.2
MCF2L-228ENST00000487354 TOGARAM2Q6ZUX3 1019 aa16.3■□□□□ 0.2
MCF2L-228ENST00000487354 SV2BQ7L1I2 683 aa16.3■□□□□ 0.2
MCF2L-228ENST00000487354 NAXDQ8IW45 347 aa16.3■□□□□ 0.2
MCF2L-228ENST00000487354 NUP93Q8N1F7 819 aa16.3■□□□□ 0.2
MCF2L-228ENST00000487354 B3GALNT2Q8NCR0 500 aa16.3■□□□□ 0.2
MCF2L-228ENST00000487354 FBXO32Q969P5 355 aa16.3■□□□□ 0.2
MCF2L-228ENST00000487354 XYLT2Q9H1B5 865 aa16.3■□□□□ 0.2
MCF2L-228ENST00000487354 HSPBP1Q9NZL4 362 aa16.3■□□□□ 0.2
MCF2L-228ENST00000487354 RAD54BQ9Y620 910 aa16.3■□□□□ 0.2
MCF2L-228ENST00000487354 MUC22E2RYF6 1773 aaPredicted RBP16.29■□□□□ 0.2
MCF2L-228ENST00000487354 HELZ2Q9BYK8 2649 aaKnown RBP16.29■□□□□ 0.2
MCF2L-228ENST00000487354 ZNF233A6NK53 670 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 KIAA0391O15091 583 aaKnown RBP16.29■□□□□ 0.2
MCF2L-228ENST00000487354 CACNG3O60359 315 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 TUBP50607 506 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 SLC5A3P53794 718 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 GRIK2Q13002 908 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 RABEP1Q15276 862 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 HECTD3Q5T447 861 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 RRAGBQ5VZM2 374 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 SLCO6A1Q86UG4 719 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 PDZD8Q8NEN9 1154 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 OR6B3Q8NGW1 331 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 MDM1Q8TC05 714 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 ZNF516Q92618 1163 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 MRGPRX1Q96LB2 322 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 SNX25Q9H3E2 840 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 PANK4Q9NVE7 773 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 PPP4R2Q9NY27 417 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 GMIPQ9P107 970 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 CCDC39Q9UFE4 941 aa16.29■□□□□ 0.2
MCF2L-228ENST00000487354 CHORDC1Q9UHD1 332 aaPredicted RBP16.29■□□□□ 0.2
MCF2L-228ENST00000487354 SRPRBQ9Y5M8 271 aaKnown RBP16.29■□□□□ 0.2
MCF2L-228ENST00000487354 ZNF217O75362 1048 aa16.28■□□□□ 0.2
MCF2L-228ENST00000487354 RTN3O95197 1032 aaPredicted RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms