RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 ADCY3O60266 1144 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 RFPL1O75677 317 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 CD19P15391 556 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 AP2B1P63010 937 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 SP2Q02086 613 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 KDSRQ06136 332 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 MMRN1Q13201 1228 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 BIRC2Q13490 618 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 MTMR2Q13614 643 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 CAPSQ13938 189 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 CHI3L2Q15782 390 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 LGSNQ5TDP6 509 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 MTHFD1LQ6UB35 978 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 NUDCD3Q8IVD9 361 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 ZNF526Q8TF50 670 aaPredicted RBP12.69□□□□□ -0.38
COL3A1-206ENST00000487010 APBB2Q92870 758 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 CLPTM1LQ96KA5 538 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 THTPAQ9BU02 230 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 NIFKQ9BYG3 293 aaKnown RBP12.69□□□□□ -0.38
COL3A1-206ENST00000487010 FAM192AQ9GZU8 254 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 ZNF395Q9H8N7 513 aaPredicted RBP12.69□□□□□ -0.38
COL3A1-206ENST00000487010 MKS1Q9NXB0 559 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 CPSF2Q9P2I0 782 aaKnown RBP12.69□□□□□ -0.38
COL3A1-206ENST00000487010 USP18Q9UMW8 372 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 SCAF8Q9UPN6 1271 aaKnown RBP12.69□□□□□ -0.38
COL3A1-206ENST00000487010 COL11A1P12107 1806 aaPredicted RBP12.69□□□□□ -0.38
COL3A1-206ENST00000487010 DCAF8L1A6NGE4 600 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 RNF8O76064 485 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 ENDOD1O94919 500 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 ERBB2P04626 1255 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 ATP5BP06576 529 aaKnown RBP12.69□□□□□ -0.38
COL3A1-206ENST00000487010 LYNP07948 512 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 PRKCHP24723 683 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 AQP5P55064 265 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 DSG1Q02413 1049 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 ACAP1Q15027 740 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 TBCCQ15814 346 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 ZNF699Q32M78 642 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 IZUMO2Q6UXV1 221 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 CRLF3Q8IUI8 442 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 RAB3IL1Q8TBN0 382 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 ECSITQ9BQ95 431 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 TCHPQ9BT92 498 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 FRMD8Q9BZ67 464 aaPredicted RBP12.69□□□□□ -0.38
COL3A1-206ENST00000487010 SLC13A1Q9BZW2 595 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 XYLT2Q9H1B5 865 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 POPDC2Q9HBU9 364 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 GPAMQ9HCL2 828 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 RAB6BQ9NRW1 208 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 PAK5Q9P286 719 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 ZC3H7BQ9UGR2 993 aaKnown RBP12.69□□□□□ -0.38
COL3A1-206ENST00000487010 SLC7A8Q9UHI5 535 aa12.69□□□□□ -0.38
COL3A1-206ENST00000487010 CCDC195A0A1B0GUA6 201 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 H7C0C1 242 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 CYB561D2O14569 222 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 SNNO75324 88 aaPredicted RBP12.68□□□□□ -0.38
COL3A1-206ENST00000487010 AP1G2O75843 785 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 UBTFL6P0CB48 400 aaPredicted RBP12.68□□□□□ -0.38
COL3A1-206ENST00000487010 KITP10721 976 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 CRABP2P29373 138 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 ATP5OP48047 213 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 POLE2P56282 527 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 SMYD5Q6GMV2 418 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 SNRNP48Q6IEG0 339 aaKnown RBP12.68□□□□□ -0.38
COL3A1-206ENST00000487010 CCNJLQ8IV13 435 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 SLC4A11Q8NBS3 891 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 GBP5Q96PP8 586 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 PEBP4Q96S96 227 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 TRIM4Q9C037 500 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 ASCC2Q9H1I8 757 aaPredicted RBP12.68□□□□□ -0.38
COL3A1-206ENST00000487010 C1orf21Q9H246 121 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 PLAC1Q9HBJ0 212 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 USP29Q9HBJ7 922 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 SMYD2Q9NRG4 433 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 NDE1Q9NXR1 346 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 HBS1LQ9Y450 684 aaKnown RBP12.68□□□□□ -0.38
COL3A1-206ENST00000487010 KAT6AQ92794 2004 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 TOM1L1O75674 476 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 SERPINA6P08185 405 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 OSBPP22059 807 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 HIRAP54198 1017 aaPredicted RBP12.68□□□□□ -0.38
COL3A1-206ENST00000487010 ALDH18A1P54886 795 aaKnown RBP12.68□□□□□ -0.38
COL3A1-206ENST00000487010 CDH6P55285 790 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 TFAMQ00059 246 aaKnown RBP12.68□□□□□ -0.38
COL3A1-206ENST00000487010 TFDP2Q14188 446 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 SURF1Q15526 300 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 FAM47CQ5HY64 1035 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 FAM182AQ5T1J6 154 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 TMCO4Q5TGY1 634 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 C1orf146Q5VVC0 180 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 C1orf228Q6PIY5 440 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 KYAT3Q6YP21 454 aaKnown RBP12.68□□□□□ -0.38
COL3A1-206ENST00000487010 CAND1Q86VP6 1230 aaKnown RBP12.68□□□□□ -0.38
COL3A1-206ENST00000487010 REPS2Q8NFH8 660 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 MTBPQ96DY7 904 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 ZBED3Q96IU2 234 aaPredicted RBP12.68□□□□□ -0.38
COL3A1-206ENST00000487010 MRPL4Q9BYD3 311 aaKnown RBP12.68□□□□□ -0.38
COL3A1-206ENST00000487010 C20orf27Q9GZN8 174 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 ASNSD1Q9NWL6 643 aa12.68□□□□□ -0.38
COL3A1-206ENST00000487010 ETAA1Q9NY74 926 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms