RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 ATP2C2O75185 946 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 SERPING1P05155 500 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 GRIK1P39086 918 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 PSMC1P62191 440 aaKnown RBP17.99■□□□□ 0.47
VIM-205ENST00000485947 YWHAEP62258 255 aaKnown RBP17.99■□□□□ 0.47
VIM-205ENST00000485947 CYP4F8P98187 520 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 CYP27A1Q02318 531 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 CUL2Q13617 745 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 ARHGAP44Q17R89 818 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 ZSCAN30Q86W11 494 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 UNC93AQ86WB7 457 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 SCN4BQ8IWT1 228 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 B3GALNT2Q8NCR0 500 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 FAM3CQ92520 227 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 RSPRY1Q96DX4 576 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 KREMEN1Q96MU8 473 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 TTLL2Q9BWV7 592 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 DNAI2Q9GZS0 605 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 APOBEC3GQ9HC16 384 aaKnown RBP17.99■□□□□ 0.47
VIM-205ENST00000485947 MAGED2Q9UNF1 606 aaPredicted RBP17.99■□□□□ 0.47
VIM-205ENST00000485947 F5P12259 2224 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 SHISA7A6NL88 538 aa17.98■□□□□ 0.47
VIM-205ENST00000485947 CLSTN1O94985 981 aa17.98■□□□□ 0.47
VIM-205ENST00000485947 TCF3P15923 654 aa17.98■□□□□ 0.47
VIM-205ENST00000485947 BDNFP23560 247 aa17.98■□□□□ 0.47
VIM-205ENST00000485947 TARSP26639 723 aaKnown RBP17.98■□□□□ 0.47
VIM-205ENST00000485947 GPR15P49685 360 aa17.98■□□□□ 0.47
VIM-205ENST00000485947 AMPD2Q01433 879 aa17.98■□□□□ 0.47
VIM-205ENST00000485947 E4F1Q66K89 784 aaPredicted RBP17.98■□□□□ 0.47
VIM-205ENST00000485947 SPOPLQ6IQ16 392 aa17.98■□□□□ 0.47
VIM-205ENST00000485947 CCDC170Q8IYT3 715 aa17.98■□□□□ 0.47
VIM-205ENST00000485947 ZNF687Q8N1G0 1237 aa17.98■□□□□ 0.47
VIM-205ENST00000485947 MAB21L3Q8N8X9 362 aa17.98■□□□□ 0.47
VIM-205ENST00000485947 NKD2Q969F2 451 aaPredicted RBP17.98■□□□□ 0.47
VIM-205ENST00000485947 FAM126AQ9BYI3 521 aaPredicted RBP17.98■□□□□ 0.47
VIM-205ENST00000485947 TRAV19A0A0A6YYK7 116 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 PRR23AA6NEV1 266 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 LAMTOR5O43504 91 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 PRAMEF12O95522 483 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 USP17L7P0C7H9 530 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 CYLC1P35663 651 aaPredicted RBP17.97■□□□□ 0.47
VIM-205ENST00000485947 KPNA1P52294 538 aaPredicted RBP17.97■□□□□ 0.47
VIM-205ENST00000485947 KLHL30Q0D2K2 578 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 FZD5Q13467 585 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 LRRC32Q14392 662 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 PPP2R5DQ14738 602 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 TDRD12Q587J7 1177 aaKnown RBP17.97■□□□□ 0.47
VIM-205ENST00000485947 MDH1BQ5I0G3 518 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 DGKKQ5KSL6 1271 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 HGSNATQ68CP4 663 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 IRF2BP2Q7Z5L9 587 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 FAM71AQ8IYT1 594 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 CRYBG2Q8N1P7 616 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 SYNPOQ8N3V7 929 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 TTC39CQ8N584 583 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 KAT5Q92993 513 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 USP13Q92995 863 aaPredicted RBP17.97■□□□□ 0.47
VIM-205ENST00000485947 EXOC4Q96A65 974 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 LRRC3BQ96PB8 259 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 CHRDQ9H2X0 955 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 CYP3A43Q9HB55 503 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 SPATA6Q9NWH7 488 aaPredicted RBP17.97■□□□□ 0.47
VIM-205ENST00000485947 COMMD8Q9NX08 183 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 MTF2Q9Y483 593 aaPredicted RBP17.97■□□□□ 0.47
VIM-205ENST00000485947 WDR87Q6ZQQ6 2873 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 NUP210Q8TEM1 1887 aaPredicted RBP17.97■□□□□ 0.47
VIM-205ENST00000485947 NCANO14594 1321 aa17.97■□□□□ 0.47
VIM-205ENST00000485947 FOXN3O00409 490 aaPredicted RBP17.96■□□□□ 0.47
VIM-205ENST00000485947 HCRTO43612 131 aa17.96■□□□□ 0.47
VIM-205ENST00000485947 GFPT2O94808 682 aa17.96■□□□□ 0.47
VIM-205ENST00000485947 RTN3O95197 1032 aaPredicted RBP17.96■□□□□ 0.47
VIM-205ENST00000485947 CD72P21854 359 aa17.96■□□□□ 0.47
VIM-205ENST00000485947 PDGFRLQ15198 375 aa17.96■□□□□ 0.47
VIM-205ENST00000485947 ITPRIPL2Q3MIP1 535 aa17.96■□□□□ 0.47
VIM-205ENST00000485947 SDHAF4Q5VUM1 108 aa17.96■□□□□ 0.47
VIM-205ENST00000485947 TXNDC8Q6A555 127 aa17.96■□□□□ 0.47
VIM-205ENST00000485947 CC2D1AQ6P1N0 951 aaPredicted RBP17.96■□□□□ 0.47
VIM-205ENST00000485947 OVCA2Q8WZ82 227 aa17.96■□□□□ 0.47
VIM-205ENST00000485947 CHP1Q99653 195 aa17.96■□□□□ 0.47
VIM-205ENST00000485947 FAM83CQ9BQN1 747 aa17.96■□□□□ 0.47
VIM-205ENST00000485947 NHEJ1Q9H9Q4 299 aaPredicted RBP17.96■□□□□ 0.47
VIM-205ENST00000485947 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.96■□□□□ 0.47
VIM-205ENST00000485947 TRPM5Q9NZQ8 1165 aa17.96■□□□□ 0.47
VIM-205ENST00000485947 ARHGAP20Q9P2F6 1191 aa17.96■□□□□ 0.47
VIM-205ENST00000485947 CNTN6Q9UQ52 1028 aa17.96■□□□□ 0.47
VIM-205ENST00000485947 SOWAHDA6NJG2 315 aa17.95■□□□□ 0.46
VIM-205ENST00000485947 TADA3O75528 432 aa17.95■□□□□ 0.46
VIM-205ENST00000485947 SP9P0CG40 484 aa17.95■□□□□ 0.46
VIM-205ENST00000485947 MSNP26038 577 aaKnown RBP17.95■□□□□ 0.46
VIM-205ENST00000485947 ASPAP45381 313 aa17.95■□□□□ 0.46
VIM-205ENST00000485947 CDR1P51861 262 aa17.95■□□□□ 0.46
VIM-205ENST00000485947 BPIFB4P59827 614 aa17.95■□□□□ 0.46
VIM-205ENST00000485947 UBR7Q8N806 425 aa17.95■□□□□ 0.46
VIM-205ENST00000485947 PDZD8Q8NEN9 1154 aa17.95■□□□□ 0.46
VIM-205ENST00000485947 CCDC42Q96M95 316 aa17.95■□□□□ 0.46
VIM-205ENST00000485947 SLITRK1Q96PX8 696 aa17.95■□□□□ 0.46
VIM-205ENST00000485947 DEF6Q9H4E7 631 aa17.95■□□□□ 0.46
VIM-205ENST00000485947 SMYD3Q9H7B4 428 aa17.95■□□□□ 0.46
VIM-205ENST00000485947 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.95■□□□□ 0.46
VIM-205ENST00000485947 PYCARDQ9ULZ3 195 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms