RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	POPDC2	Q9HBU9	364 aa		11.74	□□□□□ -0.53
APTX-223	ENST00000479656	NGRN	Q9NPE2	291 aa	Known RBP	11.74	□□□□□ -0.53
APTX-223	ENST00000479656	MRPL17	Q9NRX2	175 aa	Known RBP	11.74	□□□□□ -0.53
APTX-223	ENST00000479656	NAALADL1	Q9UQQ1	740 aa		11.74	□□□□□ -0.53
APTX-223	ENST00000479656	NR2E3	Q9Y5X4	410 aa		11.74	□□□□□ -0.53
APTX-223	ENST00000479656	PTPRD	P23468	1912 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	UQCRHL	A0A096LP55	91 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	CAPN9	O14815	690 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	TADA3	O75528	432 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	DAB1	O75553	588 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	TRUB2	O95900	331 aa	Known RBP	11.73	□□□□□ -0.53
APTX-223	ENST00000479656	FGG	P02679	453 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	UQCRH	P07919	91 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	NOS2	P35228	1153 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	BMPR1A	P36894	532 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	PTPN9	P43378	593 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	SLC25A11	Q02978	314 aa	Known RBP	11.73	□□□□□ -0.53
APTX-223	ENST00000479656	C2orf54	Q08AI8	447 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	LONRF2	Q1L5Z9	754 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	KCNT1	Q5JUK3	1230 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	LRRC38	Q5VT99	294 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	SCYL2	Q6P3W7	929 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	RNF25	Q96BH1	459 aa	Predicted RBP	11.73	□□□□□ -0.53
APTX-223	ENST00000479656	ACSF2	Q96CM8	615 aa	Predicted RBP	11.73	□□□□□ -0.53
APTX-223	ENST00000479656	TBCB	Q99426	244 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	C11orf84	Q9BUA3	381 aa	Predicted RBP	11.73	□□□□□ -0.53
APTX-223	ENST00000479656	KLHL11	Q9NVR0	708 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	USP18	Q9UMW8	372 aa		11.73	□□□□□ -0.53
APTX-223	ENST00000479656	KIAA1671	Q9BY89	1806 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	LINC01553	A4QN01	128 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	EFCAB8	A8MWE9	144 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	PI4K2B	G5E9Z4	385 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	PGRMC1	O00264	195 aa	Known RBP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	SART1	O43290	800 aa	Known RBP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	LILRB3	O75022	631 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	ABLIM3	O94929	683 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	ZRANB2	O95218	330 aa	Known RBP eCLIP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	LTF	P02788	710 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	CA8	P35219	290 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	PCK1	P35558	622 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	SULT1E1	P49888	294 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	ATXN1	P54253	815 aa	Known RBP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	HDAC4	P56524	1084 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	USP46	P62068	366 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	PITX1	P78337	314 aa	Predicted RBP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	SMTNL2	Q2TAL5	461 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	SEL1L2	Q5TEA6	688 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	BSPRY	Q5W0U4	402 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	FAM109B	Q6ICB4	259 aa	Predicted RBP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	ZNF572	Q7Z3I7	529 aa	Predicted RBP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	ADAT2	Q7Z6V5	191 aa	Known RBP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	KATNAL2	Q8IYT4	538 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	SCML4	Q8N228	414 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	ZNF461	Q8TAF7	563 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	GIPC2	Q8TF65	315 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	IRGQ	Q8WZA9	623 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	TSC1	Q92574	1164 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	EDEM1	Q92611	657 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	CENPI	Q92674	756 aa	Predicted RBP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	SLC2A13	Q96QE2	648 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	AP1M1	Q9BXS5	423 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	ZBP1	Q9H171	429 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	ALG13	Q9NP73	1137 aa	Known RBP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	CALCOCO1	Q9P1Z2	691 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	TTC7A	Q9ULT0	858 aa	Predicted RBP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	CTIF	O43310	598 aa	Known RBP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	ARHGEF15	O94989	841 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	SEC24A	O95486	1093 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	CXCL14	O95715	111 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	RARA	P10276	462 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	CTSA	P10619	480 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	NCAM1	P13591	858 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	DES	P17661	470 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	CTNNB1	P35222	781 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	GTF2F1	P35269	517 aa	Known RBP eCLIP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	PGF	P49763	221 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	TERF1	P54274	439 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	RAB33A	Q14088	237 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	ERCC6L	Q2NKX8	1250 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	SLC25A52	Q3SY17	297 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	TEX35	Q5T0J7	233 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	RSRC2	Q7L4I2	434 aa	Known RBP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	POLN	Q7Z5Q5	900 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	SPRED2	Q7Z698	418 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	ANKS1B	Q7Z6G8	1248 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	CCDC50	Q8IVM0	306 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	RCOR2	Q8IZ40	523 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	NOA1	Q8NC60	698 aa	Known RBP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	EXD1	Q8NHP7	514 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	RAPGEF5	Q92565	580 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	GOLGA1	Q92805	767 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	RPGRIP1	Q96KN7	1286 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	PEBP4	Q96S96	227 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	NPY6R	Q99463	290 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	C17orf80	Q9BSJ5	609 aa		11.72	□□□□□ -0.53
APTX-223	ENST00000479656	RBM12	Q9NTZ6	932 aa	Known RBP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	DDX56	Q9NY93	547 aa	Known RBP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	AFF4	Q9UHB7	1163 aa	Known RBP	11.72	□□□□□ -0.53
APTX-223	ENST00000479656	SYNJ2BP-COX16	A0A087WUM0	186 aa		11.71	□□□□□ -0.53
APTX-223	ENST00000479656		M0QYT0	321 aa		11.71	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms