RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 KBTBD13C9JR72 458 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 GRIN3BO60391 1043 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 NR2C2P49116 596 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 LINC00523Q86TU6 105 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 AGR3Q8TD06 166 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 TRPV6Q9H1D0 765 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 MRPL40Q9NQ50 206 aaKnown RBP15.15■□□□□ 0.02
HDAC6-220ENST00000477528 PTP4A2Q12974 167 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 CUL3Q13618 768 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 KCTD19Q17RG1 926 aaPredicted RBP15.15■□□□□ 0.02
HDAC6-220ENST00000477528 CCDC33Q8N5R6 958 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 C12orf50Q8NA57 414 aaPredicted RBP15.15■□□□□ 0.02
HDAC6-220ENST00000477528 TASP1Q9H6P5 420 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 CD248Q9HCU0 757 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 SAE1Q9UBE0 346 aaPredicted RBP15.15■□□□□ 0.02
HDAC6-220ENST00000477528 HAO1Q9UJM8 370 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 B4GALT5O43286 388 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 PPARGP37231 505 aaPredicted RBP15.15■□□□□ 0.02
HDAC6-220ENST00000477528 LHX1P48742 406 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 ZNF235Q14590 738 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 LLGL2Q6P1M3 1020 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 UPF3AQ9H1J1 476 aaKnown RBP15.15■□□□□ 0.02
HDAC6-220ENST00000477528 DCDC2Q9UHG0 476 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 CDY2AQ9Y6F7 541 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 CDY1Q9Y6F8 540 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 ZNF536O15090 1300 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 TCRBV7S2A1N4TA0A589 114 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 MYL2P10916 166 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 DRD4P21917 467 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 ELF1P32519 619 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 RGS9BPQ6ZS82 235 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 EXOC3L1Q86VI1 746 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 UNC93AQ86WB7 457 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 TCP10LQ8TDR4 215 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 C2CD2Q9Y426 696 aa15.15■□□□□ 0.02
HDAC6-220ENST00000477528 B4GALT4O60513 344 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 HSPA8P11142 646 aaKnown RBP15.14■□□□□ 0.01
HDAC6-220ENST00000477528 CACNB2Q08289 660 aaPredicted RBP15.14■□□□□ 0.01
HDAC6-220ENST00000477528 TBCCQ15814 346 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 KIF19Q2TAC6 998 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 TTC27Q6P3X3 843 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 USP50Q70EL3 339 aaPredicted RBP15.14■□□□□ 0.01
HDAC6-220ENST00000477528 DCP1BQ8IZD4 617 aaKnown RBP15.14■□□□□ 0.01
HDAC6-220ENST00000477528 GPR20Q99678 358 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 GBA2Q9HCG7 927 aaPredicted RBP15.14■□□□□ 0.01
HDAC6-220ENST00000477528 KRT82Q9NSB4 513 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 ZNF214Q9UL59 606 aaPredicted RBP15.14■□□□□ 0.01
HDAC6-220ENST00000477528 NR2E1Q9Y466 385 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 CCDC78A2IDD5 438 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 SNX3O60493 162 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 AKAP5P24588 427 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 IQSEC1Q6DN90 963 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 GLB1LQ6UWU2 654 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 RFX8Q6ZV50 586 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 KDELC2Q7Z4H8 507 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 RNF135Q8IUD6 432 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 LHX5Q9H2C1 402 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 LRRC40Q9H9A6 602 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 NAV1Q8NEY1 1877 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 TRUB2O95900 331 aaKnown RBP15.14■□□□□ 0.01
HDAC6-220ENST00000477528 HSP90AA5PQ58FG0 334 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 DNAJB3Q8WWF6 145 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 FAM167BQ9BTA0 163 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 C10orf88Q9H8K7 445 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 GPR182O15218 404 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 CYP1A1P04798 512 aaPredicted RBP15.14■□□□□ 0.01
HDAC6-220ENST00000477528 ACVR2BQ13705 512 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 RBBP5Q15291 538 aaKnown RBP15.14■□□□□ 0.01
HDAC6-220ENST00000477528 PRPF39Q86UA1 669 aaKnown RBP15.14■□□□□ 0.01
HDAC6-220ENST00000477528 IPMKQ8NFU5 416 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 SLC26A7Q8TE54 656 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 APOPT1Q96IL0 206 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 BEGAINQ9BUH8 593 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 TJP2Q9UDY2 1190 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 LRP5O75197 1615 aa15.14■□□□□ 0.01
HDAC6-220ENST00000477528 ANXA9O76027 345 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 THP07101 528 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 PDHA1P08559 390 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 RPL22P35268 128 aaKnown RBP15.13■□□□□ 0.01
HDAC6-220ENST00000477528 TKTL1P51854 596 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 YWHAZP63104 245 aaKnown RBP15.13■□□□□ 0.01
HDAC6-220ENST00000477528 HSDL1Q3SXM5 330 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 PACS2Q86VP3 889 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 KIAA0319LQ8IZA0 1049 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 COLGALT1Q8NBJ5 622 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 SKA2Q8WVK7 121 aaPredicted RBP15.13■□□□□ 0.01
HDAC6-220ENST00000477528 FHDC1Q9C0D6 1143 aaPredicted RBP15.13■□□□□ 0.01
HDAC6-220ENST00000477528 EML4Q9HC35 981 aaKnown RBP15.13■□□□□ 0.01
HDAC6-220ENST00000477528 VCX3AQ9NNX9 186 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 DNAJC8O75937 253 aaPredicted RBP15.13■□□□□ 0.01
HDAC6-220ENST00000477528 B3GAT3O94766 335 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 PTGIRP43119 386 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 MAP3K7CLP57077 242 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 ZBTB41Q5SVQ8 909 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 CMTM5Q96DZ9 223 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 TSPAN17Q96FV3 270 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 SPON2Q9BUD6 331 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 ARHGEF38Q9NXL2 777 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 TMEM59LQ9UK28 342 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 NCAM2O15394 837 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms