RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ASAP1Q9ULH1 1129 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 STXBP5LQ9Y2K9 1186 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 WASHC2CQ9Y4E1 1318 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 IGLV5-39A0A0G2JS06 123 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 EME2A4GXA9 379 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 ZNF814B7Z6K7 855 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 RRHO14718 337 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 EPN2O95208 641 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 TNFRSF8P28908 595 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 RAB1AP62820 205 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 ZXDBP98169 803 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 CFHR3Q02985 330 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 DEUP1Q05D60 604 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 INPP5JQ15735 1006 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 SLC9C1Q4G0N8 1177 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 ZDHHC24Q6UX98 284 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 COL23A1Q86Y22 540 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 RAPGEF4Q8WZA2 1011 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 HPS3Q969F9 1004 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 MSI2Q96DH6 328 aaKnown RBP4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 NT5C1BQ96P26 610 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 PUS7Q96PZ0 661 aaKnown RBP4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 ZPBPQ9BS86 351 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 TM2D2Q9BX73 214 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 VN1R3Q9BXE9 311 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 MS4A7Q9GZW8 240 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 VPS33BQ9H267 617 aa4.14□□□□□ -1.75
CCDC88A-212ENST00000474059 C2CD4BA6NLJ0 364 aa4.13□□□□□ -1.75
CCDC88A-212ENST00000474059 UQCRC1P31930 480 aa4.13□□□□□ -1.75
CCDC88A-212ENST00000474059 ARRB2P32121 409 aa4.13□□□□□ -1.75
CCDC88A-212ENST00000474059 TIRAPP58753 221 aa4.13□□□□□ -1.75
CCDC88A-212ENST00000474059 B4GALNT1Q00973 533 aa4.13□□□□□ -1.75
CCDC88A-212ENST00000474059 CCNIQ14094 377 aa4.13□□□□□ -1.75
CCDC88A-212ENST00000474059 ZNF750Q32MQ0 723 aa4.13□□□□□ -1.75
CCDC88A-212ENST00000474059 ATAT1Q5SQI0 421 aa4.13□□□□□ -1.75
CCDC88A-212ENST00000474059 KCTD20Q7Z5Y7 419 aa4.13□□□□□ -1.75
CCDC88A-212ENST00000474059 SMAD5Q99717 465 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-212ENST00000474059 TRIM5Q9C035 493 aa4.13□□□□□ -1.75
CCDC88A-212ENST00000474059 SLC12A5Q9H2X9 1139 aa4.13□□□□□ -1.75
CCDC88A-212ENST00000474059 SPC25Q9HBM1 224 aa4.13□□□□□ -1.75
CCDC88A-212ENST00000474059 CDY1Q9Y6F8 540 aa4.13□□□□□ -1.75
CCDC88A-212ENST00000474059 A0A0G2JK05 382 aa4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 ANKRD62A6NC57 917 aa4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 IFITM10A6NMD0 228 aa4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 C16orf96A6NNT2 1141 aa4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 CLIC1O00299 241 aa4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 TLX3O43711 291 aaPredicted RBP4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 NGFRP08138 427 aa4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 T-ENOLP0DO92 83 aa4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 XRCC6P12956 609 aaKnown RBP eCLIP4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 HOXB2P14652 356 aa4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 CREB1P16220 341 aa4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 HSF1Q00613 529 aa4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 MFSD13AQ14CX5 517 aa4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 METTL25Q8N6Q8 603 aa4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 KBTBD7Q8WVZ9 684 aa4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 ZBTB45Q96K62 511 aaPredicted RBP4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 MRPL44Q9H9J2 332 aaKnown RBP4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 AGO4Q9HCK5 861 aaKnown RBP4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 SEMA5BQ9P283 1151 aa4.12□□□□□ -1.75
CCDC88A-212ENST00000474059 A0A087WYN8 130 aa4.11□□□□□ -1.75
CCDC88A-212ENST00000474059 A0A088AWK7 358 aa4.11□□□□□ -1.75
CCDC88A-212ENST00000474059 LACTBL1A8MY62 500 aa4.11□□□□□ -1.75
CCDC88A-212ENST00000474059 BTN3A1O00481 513 aa4.11□□□□□ -1.75
CCDC88A-212ENST00000474059 CCDC157Q569K6 752 aa4.11□□□□□ -1.75
CCDC88A-212ENST00000474059 EARS2Q5JPH6 523 aaKnown RBP4.11□□□□□ -1.75
CCDC88A-212ENST00000474059 DCAF12L1Q5VU92 463 aa4.11□□□□□ -1.75
CCDC88A-212ENST00000474059 TFAP2DQ7Z6R9 452 aa4.11□□□□□ -1.75
CCDC88A-212ENST00000474059 OR56A3Q8NH54 315 aa4.11□□□□□ -1.75
CCDC88A-212ENST00000474059 SLC25A28Q96A46 364 aa4.11□□□□□ -1.75
CCDC88A-212ENST00000474059 HSPBAP1Q96EW2 488 aa4.11□□□□□ -1.75
CCDC88A-212ENST00000474059 FAM84BQ96KN1 310 aaPredicted RBP4.11□□□□□ -1.75
CCDC88A-212ENST00000474059 SCNM1Q9BWG6 230 aa4.11□□□□□ -1.75
CCDC88A-212ENST00000474059 SNX15Q9NRS6 342 aa4.11□□□□□ -1.75
CCDC88A-212ENST00000474059 MGAT4CQ9UBM8 478 aa4.11□□□□□ -1.75
CCDC88A-212ENST00000474059 A0A1W2PPC1 479 aa4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 PSMD9O00233 223 aa4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 CD3EAPO15446 510 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 TMPRSS11DO60235 418 aa4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 SRGAP2O75044 1071 aa4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 MBPP02686 304 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 CCND1P24385 295 aa4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 AKAP5P24588 427 aa4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 GPC5P78333 572 aa4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 SATB1Q01826 763 aa4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 STIM1Q13586 685 aa4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 ZNF267Q14586 743 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 LMBRD2Q68DH5 695 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 VSTM1Q6UX27 236 aa4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 ZNF793Q6ZN11 406 aa4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 RAB11FIP4Q86YS3 637 aa4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 GATA5Q9BWX5 397 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 ATP6V0A4Q9HBG4 840 aa4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 XPNPEP3Q9NQH7 507 aa4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-212ENST00000474059 KRTAP9-6A8MVA2 160 aa4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 FOXN3O00409 490 aaPredicted RBP4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 FYB1O15117 783 aa4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 PRAMEF2O60811 474 aa4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 IL33O95760 270 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms