RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ZNF394Q53GI3 561 aa16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 ISM2Q6H9L7 571 aa16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 GPRIN1Q7Z2K8 1008 aa16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 KBTBD6Q86V97 674 aa16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 RPLP0P6Q8NHW5 317 aa16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 GAB3Q8WWW8 586 aa16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 EZH1Q92800 747 aaPredicted RBP16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 CYFIP2Q96F07 1278 aa16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 NACA2Q9H009 215 aa16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 ARRDC1-AS1Q9H2J1 176 aa16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 COMMD8Q9NX08 183 aa16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 IL37Q9NZH6 218 aa16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 EPG5Q9HCE0 2579 aa16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 STX10O60499 249 aa16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 RPP40O75818 363 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 KRT37O76014 449 aa16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 IRF1P10914 325 aa16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 DHCR24Q15392 516 aa16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 FBXO43Q4G163 708 aa16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 COBLL1Q53SF7 1204 aa16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 ANKRD40Q6AI12 368 aa16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 CLEC20AQ6ZU45 233 aa16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 FBXL13Q8NEE6 735 aa16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 WHAMMQ8TF30 809 aa16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 ZFRQ96KR1 1074 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 TIGD1Q96MW7 591 aa16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 HHIPQ96QV1 700 aa16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 HNRNPABQ99729 332 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 FBXO44Q9H4M3 255 aa16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 RXFP3Q9NSD7 469 aa16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 RAB20Q9NX57 234 aa16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 SH3BP1Q9Y3L3 701 aa16.61■□□□□ 0.25
CCDC88B-205ENST00000472524 FAM92AA1XBS5 289 aa16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 SLC16A3O15427 465 aaKnown RBP16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 TLR5O60602 858 aa16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 ZDHHC11BP0C7U3 371 aa16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 OPRD1P41143 372 aa16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 PGFP49763 221 aa16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 SEC13P55735 322 aa16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 FKBP3Q00688 224 aaKnown RBP16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 GAB4Q2WGN9 574 aa16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 CBWD6Q4V339 395 aa16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 CBWD3Q5JTY5 395 aa16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 CBWD5Q5RIA9 395 aa16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 PPP1R26Q5T8A7 1209 aaPredicted RBP16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 SNX30Q5VWJ9 437 aa16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 CACNA2D4Q7Z3S7 1137 aa16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 SPATA20Q8TB22 786 aa16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 ARID3AQ99856 593 aa16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 DNAI2Q9GZS0 605 aa16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 TLR8Q9NR97 1041 aaKnown RBP16.6■□□□□ 0.25
CCDC88B-205ENST00000472524 THADAQ6YHU6 1953 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 CCDC163A0A0D9SF12 145 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 E2F8A0AVK6 867 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 HHLA1C9JL84 531 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 CYP26A1O43174 497 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 CCDC192P0DO97 292 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 ADH5P11766 374 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 ACO1P21399 889 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 KCNA4P22459 653 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 TUBP50607 506 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 MCCD1P59942 119 aaPredicted RBP16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 STIM1Q13586 685 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 AASDHQ4L235 1098 aaPredicted RBP16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 ZC3H3Q8IXZ2 948 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 ADGRG2Q8IZP9 1017 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 ABCA7Q8IZY2 2146 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 KIAA1958Q8N8K9 716 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 TATDN2Q93075 761 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 WBP2Q969T9 261 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 ACDQ96AP0 544 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 HEXIM2Q96MH2 286 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 SMOC1Q9H4F8 434 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 CISHQ9NSE2 258 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 TBC1D14Q9P2M4 693 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 MAN1B1Q9UKM7 699 aa16.59■□□□□ 0.25
CCDC88B-205ENST00000472524 NUP205Q92621 2012 aa16.58■□□□□ 0.25
CCDC88B-205ENST00000472524 PSMA7O14818 248 aa16.58■□□□□ 0.24
CCDC88B-205ENST00000472524 FOXD2O60548 495 aaPredicted RBP16.58■□□□□ 0.24
CCDC88B-205ENST00000472524 EPN2O95208 641 aa16.58■□□□□ 0.24
CCDC88B-205ENST00000472524 ADH1CP00326 375 aa16.58■□□□□ 0.24
CCDC88B-205ENST00000472524 SLC6A11P48066 632 aa16.58■□□□□ 0.24
CCDC88B-205ENST00000472524 LRRC63Q05C16 580 aa16.58■□□□□ 0.24
CCDC88B-205ENST00000472524 DMC1Q14565 340 aa16.58■□□□□ 0.24
CCDC88B-205ENST00000472524 KLHL10Q6JEL2 608 aa16.58■□□□□ 0.24
CCDC88B-205ENST00000472524 RHBDF2Q6PJF5 856 aa16.58■□□□□ 0.24
CCDC88B-205ENST00000472524 C12orf40Q86WS4 652 aa16.58■□□□□ 0.24
CCDC88B-205ENST00000472524 C12orf50Q8NA57 414 aaPredicted RBP16.58■□□□□ 0.24
CCDC88B-205ENST00000472524 LOXL4Q96JB6 756 aa16.58■□□□□ 0.24
CCDC88B-205ENST00000472524 GTPBP4Q9BZE4 634 aaKnown RBP16.58■□□□□ 0.24
CCDC88B-205ENST00000472524 ARMCX3Q9UH62 379 aaPredicted RBP16.58■□□□□ 0.24
CCDC88B-205ENST00000472524 SCML2Q9UQR0 700 aa16.58■□□□□ 0.24
CCDC88B-205ENST00000472524 ACACBO00763 2458 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 A0A1W2PQH9 124 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 ANTXRLA6NF34 631 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 K7EQS6 105 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 GADD45BO75293 160 aaPredicted RBP16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 TBX18O95935 607 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 ZNF806P0C7X5 589 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 CD44P16070 742 aaKnown RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms