RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 PLA2G2FQ9BZM2 168 aa12.56□□□□□ -0.4
VPS13D-204ENST00000469054 TRIM5Q9C035 493 aa12.56□□□□□ -0.4
VPS13D-204ENST00000469054 RNF38Q9H0F5 515 aa12.56□□□□□ -0.4
VPS13D-204ENST00000469054 SMG9Q9H0W8 520 aaKnown RBP12.56□□□□□ -0.4
VPS13D-204ENST00000469054 NMUR1Q9HB89 426 aa12.56□□□□□ -0.4
VPS13D-204ENST00000469054 OSER1Q9NX31 292 aa12.56□□□□□ -0.4
VPS13D-204ENST00000469054 OBP2AQ9NY56 170 aa12.56□□□□□ -0.4
VPS13D-204ENST00000469054 CLIC5Q9NZA1 410 aa12.56□□□□□ -0.4
VPS13D-204ENST00000469054 AIPL1Q9NZN9 384 aa12.56□□□□□ -0.4
VPS13D-204ENST00000469054 MUTYHQ9UIF7 546 aa12.56□□□□□ -0.4
VPS13D-204ENST00000469054 NAGPAQ9UK23 515 aa12.56□□□□□ -0.4
VPS13D-204ENST00000469054 CAPN11Q9UMQ6 739 aa12.56□□□□□ -0.4
VPS13D-204ENST00000469054 DENND4AQ7Z401 1863 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 HEPACAM2A8MVW5 462 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 E5RJQ4 531 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 DPYSL4O14531 572 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 COCHO43405 550 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 TLR5O60602 858 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 PRAMEF12O95522 483 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 LSM8O95777 96 aaKnown RBP12.55□□□□□ -0.4
VPS13D-204ENST00000469054 OLFM2O95897 454 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 CKMP06732 381 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 RALAP11233 206 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 RARGP13631 454 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 CHRNB2P17787 502 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 DAOAP59103 153 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 YWHAGP61981 247 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS13D-204ENST00000469054 SLC7A9P82251 487 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 ZBED6P86452 979 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 FMO1Q01740 532 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 ZNF268Q14587 947 aaPredicted RBP12.55□□□□□ -0.4
VPS13D-204ENST00000469054 ASIC2Q16515 512 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 SPECC1LQ69YQ0 1117 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 BHLHA9Q7RTU4 235 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 MFSD6LQ8IWD5 586 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 ZNF276Q8N554 614 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 CELF5Q8N6W0 485 aaKnown RBP12.55□□□□□ -0.4
VPS13D-204ENST00000469054 ZNF397Q8NF99 534 aaPredicted RBP12.55□□□□□ -0.4
VPS13D-204ENST00000469054 IRGQQ8WZA9 623 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 USP13Q92995 863 aaPredicted RBP12.55□□□□□ -0.4
VPS13D-204ENST00000469054 RSPRY1Q96DX4 576 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 CPXM1Q96SM3 734 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 MIS12Q9H081 205 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 NUCKS1Q9H1E3 243 aaKnown RBP12.55□□□□□ -0.4
VPS13D-204ENST00000469054 CCSER2Q9H7U1 834 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 KIF9Q9HAQ2 790 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 TDP1Q9NUW8 608 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS13D-204ENST00000469054 ARHGAP26Q9UNA1 814 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 SORCS3Q9UPU3 1222 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 LUC7L2Q9Y383 392 aaKnown RBP12.55□□□□□ -0.4
VPS13D-204ENST00000469054 VCANP13611 3396 aa12.55□□□□□ -0.4
VPS13D-204ENST00000469054 YJEFN3A6XGL0 299 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 E7ENQ6 273 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 PAPSS1O43252 624 aaPredicted RBP12.54□□□□□ -0.4
VPS13D-204ENST00000469054 CYP1A1P04798 512 aaPredicted RBP12.54□□□□□ -0.4
VPS13D-204ENST00000469054 GYPCP04921 128 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 MBL2P11226 248 aaPredicted RBP12.54□□□□□ -0.4
VPS13D-204ENST00000469054 PSMC3P17980 439 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 PRKCIP41743 596 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 SNX16P57768 344 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 PTPN20Q4JDL3 420 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 BSPRYQ5W0U4 402 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 E4F1Q66K89 784 aaPredicted RBP12.54□□□□□ -0.4
VPS13D-204ENST00000469054 KLHDC10Q6PID8 442 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 VITQ6UXI7 678 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 TRIM72Q6ZMU5 477 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 TADA2BQ86TJ2 420 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 SCUBE3Q8IX30 993 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 BPIFB1Q8TDL5 484 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 IPO4Q8TEX9 1081 aaKnown RBP12.54□□□□□ -0.4
VPS13D-204ENST00000469054 CLEC4CQ8WTT0 213 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 DEPDC1BQ8WUY9 529 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 SYN2Q92777 582 aaPredicted RBP12.54□□□□□ -0.4
VPS13D-204ENST00000469054 LRRC3BQ96PB8 259 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 CDK5RAP1Q96SZ6 601 aaKnown RBP12.54□□□□□ -0.4
VPS13D-204ENST00000469054 PCDHB18PQ96TA0 734 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 AGPAT1Q99943 283 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 TRMT61BQ9BVS5 477 aaKnown RBP12.54□□□□□ -0.4
VPS13D-204ENST00000469054 NACA2Q9H009 215 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 CCL26Q9Y258 94 aa12.54□□□□□ -0.4
VPS13D-204ENST00000469054 HAX1O00165 279 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 TNFRSF10AO00220 468 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 SART1O43290 800 aaKnown RBP12.53□□□□□ -0.4
VPS13D-204ENST00000469054 DCXO43602 365 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 TBX18O95935 607 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 UNGP13051 313 aaPredicted RBP12.53□□□□□ -0.4
VPS13D-204ENST00000469054 TCF3P15923 654 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 CASP14P31944 242 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 ATP5C1P36542 298 aaKnown RBP12.53□□□□□ -0.4
VPS13D-204ENST00000469054 NOMO3P69849 1222 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 GPC5P78333 572 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 ZXDBP98169 803 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 FCHO2Q0JRZ9 810 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 TRIM14Q14142 442 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 C10orf120Q5SQS8 335 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 NAA35Q5VZE5 725 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 BTBD8Q5XKL5 378 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 HFE2Q6ZVN8 426 aa12.53□□□□□ -0.4
VPS13D-204ENST00000469054 ERICH1Q86X53 443 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms