RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 ATP2A3Q93084 1043 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 WBP2Q969T9 261 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 KREMEN1Q96MU8 473 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 THAP9Q9H5L6 903 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 TSPAN16Q9UKR8 245 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 PROB1E7EW31 1015 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 O00370 1275 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 SLC9A3R1O14745 358 aaPredicted RBP13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 CALCAP01258 141 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 PAEPP09466 180 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 SLC9A1P19634 815 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 ATP5C1P36542 298 aaKnown RBP13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 SLC8A3P57103 927 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 CSTF1Q05048 431 aaKnown RBP13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 PDE4CQ08493 712 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 NR1H3Q13133 447 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 CCINQ13939 588 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 LRRC32Q14392 662 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 DGKKQ5KSL6 1271 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 NAIF1Q69YI7 327 aaPredicted RBP13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 FSTL4Q6MZW2 842 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 ZSWIM1Q9BR11 485 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 CRACR2AQ9BSW2 395 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 NACA2Q9H009 215 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 UBE2TQ9NPD8 197 aaPredicted RBP13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 CYLDQ9NQC7 956 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 HESX1Q9UBX0 185 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 DACH1Q9UI36 760 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 NUDT5Q9UKK9 219 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 FBXO4Q9UKT5 387 aa13.42□□□□□ -0.26
PRPF40A-203ENST00000448428 E2F8A0AVK6 867 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 GOLGA6L22H0YM25 854 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 XPO1O14980 1071 aaKnown RBP13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 NFATC1O95644 943 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 RARGP13631 454 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 MTIF2P46199 727 aaKnown RBP13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 PSEN1P49768 467 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 TKTL1P51854 596 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 ZNF132P52740 706 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 BCAT1P54687 386 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 APBA1Q02410 837 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 GRSF1Q12849 480 aaKnown RBP eCLIP13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 CNGA2Q16280 664 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 GAB4Q2WGN9 574 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 ZNF528Q3MIS6 628 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 PKDCCQ504Y2 493 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 CT47A1Q5JQC4 288 aaPredicted RBP13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 RHBDF2Q6PJF5 856 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 TSSK4Q6SA08 328 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 LCLAT1Q6UWP7 414 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 Q6ZS52 159 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 RBM43Q6ZSC3 357 aaKnown RBP13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 ZNF276Q8N554 614 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 RBBP8NLQ8NC74 664 aaPredicted RBP13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 P2RY13Q9BPV8 354 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 IER2Q9BTL4 223 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 KLF16Q9BXK1 252 aaPredicted RBP13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 TBC1D14Q9P2M4 693 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 NAGPAQ9UK23 515 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 CNTN6Q9UQ52 1028 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 R4GN57 208 aa13.41□□□□□ -0.26
PRPF40A-203ENST00000448428 CACNA1HO95180 2353 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 MDM4O15151 490 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 EGFP01133 1207 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 CYP17A1P05093 508 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 IRF1P10914 325 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 BRD2P25440 801 aaKnown RBP13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 PON1P27169 355 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 BST2Q10589 180 aaKnown RBP13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 DHCR24Q15392 516 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 MAN2A1Q16706 1144 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 HSP90AA4PQ58FG1 418 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 C10orf120Q5SQS8 335 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 PM20D1Q6GTS8 502 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 GJB7Q6PEY0 223 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 KLHDC10Q6PID8 442 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 TRIM65Q6PJ69 517 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 GBP6Q6ZN66 633 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 HTR3DQ70Z44 454 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 FAM114A1Q8IWE2 563 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 SYNPOQ8N3V7 929 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 SPEM1Q8N4L4 309 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 SLC35F5Q8WV83 523 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 NDRG1Q92597 394 aaKnown RBP13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 CD101Q93033 1021 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 PRMT8Q9NR22 394 aaPredicted RBP13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 SAMSN1Q9NSI8 373 aaKnown RBP13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 CLIC5Q9NZA1 410 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 DNMT3LQ9UJW3 386 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 SH3BP1Q9Y3L3 701 aa13.4□□□□□ -0.26
PRPF40A-203ENST00000448428 GTPBP10A4D1E9 387 aaKnown RBP13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 GREM1O60565 184 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 GABBR2O75899 941 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 ZBED1O96006 694 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 SETSIPP0DME0 302 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 RALAP11233 206 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 KRT5P13647 590 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 DRD1P21728 446 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 OPRD1P41143 372 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms