RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 ASXL3Q9C0F0 2248 aa15.32■□□□□ 0.04
HMGN1-208ENST00000443046 URB1O60287 2271 aaKnown RBP15.32■□□□□ 0.04
HMGN1-208ENST00000443046 GCNT3O95395 438 aa15.31■□□□□ 0.04
HMGN1-208ENST00000443046 ABL1P00519 1130 aa15.31■□□□□ 0.04
HMGN1-208ENST00000443046 NDUFV2P19404 249 aa15.31■□□□□ 0.04
HMGN1-208ENST00000443046 GNL1P36915 607 aaPredicted RBP15.31■□□□□ 0.04
HMGN1-208ENST00000443046 DUOXA2Q1HG44 320 aa15.31■□□□□ 0.04
HMGN1-208ENST00000443046 C10orf76Q5T2E6 689 aa15.31■□□□□ 0.04
HMGN1-208ENST00000443046 TMEM25Q86YD3 366 aa15.31■□□□□ 0.04
HMGN1-208ENST00000443046 NAXDQ8IW45 347 aa15.31■□□□□ 0.04
HMGN1-208ENST00000443046 GPD1LQ8N335 351 aa15.31■□□□□ 0.04
HMGN1-208ENST00000443046 PNPLA1Q8N8W4 532 aa15.31■□□□□ 0.04
HMGN1-208ENST00000443046 PDZD8Q8NEN9 1154 aa15.31■□□□□ 0.04
HMGN1-208ENST00000443046 HSPA12BQ96MM6 686 aa15.31■□□□□ 0.04
HMGN1-208ENST00000443046 BBC3Q96PG8 261 aaPredicted RBP15.31■□□□□ 0.04
HMGN1-208ENST00000443046 ACOX2Q99424 681 aa15.31■□□□□ 0.04
HMGN1-208ENST00000443046 GABRG3Q99928 467 aa15.31■□□□□ 0.04
HMGN1-208ENST00000443046 PCIF1Q9H4Z3 704 aa15.31■□□□□ 0.04
HMGN1-208ENST00000443046 FAM124BQ9H5Z6 455 aaPredicted RBP15.31■□□□□ 0.04
HMGN1-208ENST00000443046 CCDC86Q9H6F5 360 aaKnown RBP15.31■□□□□ 0.04
HMGN1-208ENST00000443046 SPHK2Q9NRA0 654 aa15.31■□□□□ 0.04
HMGN1-208ENST00000443046 IL37Q9NZH6 218 aa15.31■□□□□ 0.04
HMGN1-208ENST00000443046 KIAA1522Q9P206 1035 aaPredicted RBP15.31■□□□□ 0.04
HMGN1-208ENST00000443046 KIAA0391O15091 583 aaKnown RBP15.3■□□□□ 0.04
HMGN1-208ENST00000443046 GREM1O60565 184 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 ZDHHC11BP0C7U3 371 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 PTPN1P18031 435 aaKnown RBP15.3■□□□□ 0.04
HMGN1-208ENST00000443046 YWHAQP27348 245 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 GJB2P29033 226 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 TUBP50607 506 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 ALCAMQ13740 583 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 SF3A1Q15459 793 aaKnown RBP15.3■□□□□ 0.04
HMGN1-208ENST00000443046 PLEKHG6Q3KR16 790 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 BTBD8Q5XKL5 378 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 EGFLAMQ63HQ2 1017 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 NUDT18Q6ZVK8 323 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 SLCO6A1Q86UG4 719 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 BBS7Q8IWZ6 715 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 NUP93Q8N1F7 819 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 IPO4Q8TEX9 1081 aaKnown RBP15.3■□□□□ 0.04
HMGN1-208ENST00000443046 WBP2Q969T9 261 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 MMS19Q96T76 1030 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 B3GNT5Q9BYG0 378 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 ZNF518BQ9C0D4 1074 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 ELOVL4Q9GZR5 314 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 DPEP3Q9H4B8 488 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 SCUBE2Q9NQ36 999 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 DKK4Q9UBT3 224 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 SUSD2Q9UGT4 822 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 CYP8B1Q9UNU6 501 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 CFAP46Q8IYW2 2715 aa15.3■□□□□ 0.04
HMGN1-208ENST00000443046 FAM92AA1XBS5 289 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 H3BQV1 296 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 TULP1O00294 542 aaPredicted RBP15.29■□□□□ 0.04
HMGN1-208ENST00000443046 DKK1O94907 266 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 RTN3O95197 1032 aaPredicted RBP15.29■□□□□ 0.04
HMGN1-208ENST00000443046 CST3P01034 146 aaPredicted RBP15.29■□□□□ 0.04
HMGN1-208ENST00000443046 TNNC2P02585 160 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 WASP42768 502 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 SURF1Q15526 300 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 HECTD3Q5T447 861 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 TOGARAM2Q6ZUX3 1019 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 HS2ST1Q7LGA3 356 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 TRAPPC11Q7Z392 1133 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 CBWD2Q8IUF1 395 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 WDR49Q8IV35 697 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 SYCP3Q8IZU3 236 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 DNASE2BQ8WZ79 361 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 ZDHHC5Q9C0B5 715 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 CD93Q9NPY3 652 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 CHORDC1Q9UHD1 332 aaPredicted RBP15.29■□□□□ 0.04
HMGN1-208ENST00000443046 PCOLCE2Q9UKZ9 415 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 R3HCC1Q9Y3T6 440 aaKnown RBP15.29■□□□□ 0.04
HMGN1-208ENST00000443046 NFE2L3Q9Y4A8 694 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 PCDHB9Q9Y5E1 797 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 KNL1Q8NG31 2342 aa15.29■□□□□ 0.04
HMGN1-208ENST00000443046 ZNF233A6NK53 670 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 PRRT4C9JH25 899 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 CLDN5O00501 218 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 CACNG3O60359 315 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 GRIK2Q13002 908 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 ANO4Q32M45 955 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 DBX2Q6ZNG2 339 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 HTR3DQ70Z44 454 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 SV2BQ7L1I2 683 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 METTL3Q86U44 580 aaKnown RBP15.28■□□□□ 0.04
HMGN1-208ENST00000443046 SCAMP5Q8TAC9 235 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 BAHD1Q8TBE0 780 aaPredicted RBP15.28■□□□□ 0.04
HMGN1-208ENST00000443046 MDM1Q8TC05 714 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 FOXJ1Q92949 421 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 FBXO32Q969P5 355 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 MRGPRX1Q96LB2 322 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 KCNK16Q96T55 309 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 SNX25Q9H3E2 840 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 CCSER2Q9H7U1 834 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 MARK1Q9P0L2 795 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 APOBEC2Q9Y235 224 aaKnown RBP15.28■□□□□ 0.04
HMGN1-208ENST00000443046 SH3BP1Q9Y3L3 701 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 CABIN1Q9Y6J0 2220 aa15.28■□□□□ 0.04
HMGN1-208ENST00000443046 GOLGA4Q13439 2230 aaKnown RBP15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms