RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 SPOPLQ6IQ16 392 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 GJB7Q6PEY0 223 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 RRAGAQ7L523 313 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 TMEM150AQ86TG1 271 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 FAM160A2Q8N612 972 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-208ENST00000437607 CCDC112Q8NEF3 446 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 BPIFB1Q8TDL5 484 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 HPDLQ96IR7 371 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 SEPT5Q99719 369 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-208ENST00000437607 SLC46A2Q9BY10 475 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 TASP1Q9H6P5 420 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 UBE2TQ9NPD8 197 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-208ENST00000437607 MYO6Q9UM54 1294 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 CEP295Q9C0D2 2601 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 OTOL1A6NHN0 477 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-208ENST00000437607 F8VZ95 297 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 DPYSL4O14531 572 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 FGF19O95750 216 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 STAU1O95793 577 aaKnown RBP12.87□□□□□ -0.35
PTPRF-208ENST00000437607 HOXA6P31267 233 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 STAT1P42224 750 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 PI4KAP42356 2102 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 TAF6P49848 677 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 ADKP55263 362 aaKnown RBP12.87□□□□□ -0.35
PTPRF-208ENST00000437607 CUL2Q13617 745 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 ASIC2Q16515 512 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 MGAT5BQ3V5L5 792 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 TDRD12Q587J7 1177 aaKnown RBP12.87□□□□□ -0.35
PTPRF-208ENST00000437607 PPM1JQ5JR12 505 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 SFMBT2Q5VUG0 894 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 ITIH5Q86UX2 942 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 WDR5BQ86VZ2 330 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 TC2NQ8N9U0 490 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 OR8K1Q8NGG5 319 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 RIN3Q8TB24 985 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 GIPC2Q8TF65 315 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 BAP1Q92560 729 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 PANX2Q96RD6 677 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 DNAJC7Q99615 494 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 FAM83CQ9BQN1 747 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 XYLT2Q9H1B5 865 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 VRTNQ9H8Y1 702 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 APOBEC3GQ9HC16 384 aaKnown RBP12.87□□□□□ -0.35
PTPRF-208ENST00000437607 HPS4Q9NQG7 708 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 NXF1Q9UBU9 619 aaKnown RBP12.87□□□□□ -0.35
PTPRF-208ENST00000437607 AJAP1Q9UKB5 411 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-208ENST00000437607 CCL26Q9Y258 94 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 ASPMQ8IZT6 3477 aa12.87□□□□□ -0.35
PTPRF-208ENST00000437607 PLXND1Q9Y4D7 1925 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 ZZEF1O43149 2961 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 CYB561D2O14569 222 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 F11P03951 625 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 CCDC172P0C7W6 258 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 HAPLN1P10915 354 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-208ENST00000437607 HMGA1P17096 107 aaKnown RBP12.86□□□□□ -0.35
PTPRF-208ENST00000437607 PAX3P23760 479 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 CDC25CP30307 473 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 SOX5P35711 763 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 TUFMP49411 452 aaKnown RBP12.86□□□□□ -0.35
PTPRF-208ENST00000437607 JAM2P57087 298 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 DRAP1Q14919 205 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-208ENST00000437607 ITPRIPL2Q3MIP1 535 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 WDR72Q3MJ13 1102 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 ARHGAP15Q53QZ3 475 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 SCARA3Q6AZY7 606 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 FSTL4Q6MZW2 842 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 SYNPOQ8N3V7 929 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 STKLD1Q8NE28 680 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 FAXDC2Q96IV6 333 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 NAA15Q9BXJ9 866 aaKnown RBP12.86□□□□□ -0.35
PTPRF-208ENST00000437607 STK33Q9BYT3 514 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 GKN1Q9NS71 199 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 TMLHEQ9NVH6 421 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 POLR3BQ9NW08 1133 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-208ENST00000437607 MYH10P35580 1976 aa12.86□□□□□ -0.35
PTPRF-208ENST00000437607 AKAP13Q12802 2813 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 CST3P01034 146 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-208ENST00000437607 KRT5P13647 590 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 FERP16591 822 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 USP8P40818 1118 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 ASPAP45381 313 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 PXNP49023 591 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-208ENST00000437607 GPR15P49685 360 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 ARID5BQ14865 1188 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 TMEM196Q5HYL7 178 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 WSCD1Q658N2 575 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 TRIM68Q6AZZ1 485 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 DPY19L2P1Q6NXN4 242 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 CMTM8Q8IZV2 173 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 CXorf38Q8TB03 319 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 SHC3Q92529 594 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 KAT5Q92993 513 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 TATDN2Q93075 761 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 JAKMIP2Q96AA8 810 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 ELMO3Q96BJ8 720 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 KREMEN1Q96MU8 473 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 MMS19Q96T76 1030 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 ARID3AQ99856 593 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 SMYD3Q9H7B4 428 aa12.85□□□□□ -0.35
PTPRF-208ENST00000437607 FBRSL1Q9HCM7 1045 aaKnown RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms