RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 KCNK1O00180 336 aa9□□□□□ -0.97
USP40-203ENST00000427112 PPEF2O14830 753 aa9□□□□□ -0.97
USP40-203ENST00000427112 TYROBPO43914 113 aa9□□□□□ -0.97
USP40-203ENST00000427112 PEX1O43933 1283 aa9□□□□□ -0.97
USP40-203ENST00000427112 OATP04181 439 aa9□□□□□ -0.97
USP40-203ENST00000427112 TPH1P17752 444 aa9□□□□□ -0.97
USP40-203ENST00000427112 PTPN4P29074 926 aa9□□□□□ -0.97
USP40-203ENST00000427112 PHBP35232 272 aa9□□□□□ -0.97
USP40-203ENST00000427112 YARSP54577 528 aaKnown RBP9□□□□□ -0.97
USP40-203ENST00000427112 HADHBP55084 474 aaKnown RBP9□□□□□ -0.97
USP40-203ENST00000427112 DLG2Q15700 870 aa9□□□□□ -0.97
USP40-203ENST00000427112 GRAMD1BQ3KR37 738 aa9□□□□□ -0.97
USP40-203ENST00000427112 C4orf50Q6ZRC1 276 aa9□□□□□ -0.97
USP40-203ENST00000427112 FAM131BQ86XD5 332 aa9□□□□□ -0.97
USP40-203ENST00000427112 PPIL6Q8IXY8 311 aa9□□□□□ -0.97
USP40-203ENST00000427112 TEX9Q8N6V9 391 aa9□□□□□ -0.97
USP40-203ENST00000427112 KHSRPQ92945 711 aaKnown RBP eCLIP9□□□□□ -0.976e-11■■□□□ 13.4
USP40-203ENST00000427112 NSL1Q96IY1 281 aa9□□□□□ -0.97
USP40-203ENST00000427112 LGMNQ99538 433 aa9□□□□□ -0.97
USP40-203ENST00000427112 TMEM109Q9BVC6 243 aa9□□□□□ -0.97
USP40-203ENST00000427112 PNPOQ9NVS9 261 aa9□□□□□ -0.97
USP40-203ENST00000427112 PPM1HQ9ULR3 514 aa9□□□□□ -0.97
USP40-203ENST00000427112 COQ4Q9Y3A0 265 aa9□□□□□ -0.97
USP40-203ENST00000427112 SMAPO00193 183 aa9□□□□□ -0.97
USP40-203ENST00000427112 TRPA1O75762 1119 aa9□□□□□ -0.97
USP40-203ENST00000427112 MTA2O94776 668 aa9□□□□□ -0.97
USP40-203ENST00000427112 PGM3O95394 542 aa9□□□□□ -0.97
USP40-203ENST00000427112 AVPR1AP37288 418 aa9□□□□□ -0.97
USP40-203ENST00000427112 BCAR1P56945 870 aa9□□□□□ -0.97
USP40-203ENST00000427112 TGFB2P61812 414 aa9□□□□□ -0.97
USP40-203ENST00000427112 PDE1BQ01064 536 aa9□□□□□ -0.97
USP40-203ENST00000427112 CLUL1Q15846 466 aa9□□□□□ -0.97
USP40-203ENST00000427112 HADHQ16836 314 aaKnown RBP9□□□□□ -0.97
USP40-203ENST00000427112 ZNF667Q5HYK9 610 aa9□□□□□ -0.97
USP40-203ENST00000427112 TREML2Q5T2D2 321 aa9□□□□□ -0.97
USP40-203ENST00000427112 NXNQ6DKJ4 435 aa9□□□□□ -0.97
USP40-203ENST00000427112 PAOXQ6QHF9 649 aa9□□□□□ -0.97
USP40-203ENST00000427112 IFT122Q9HBG6 1241 aa9□□□□□ -0.97
USP40-203ENST00000427112 WDR27A2RRH5 827 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 ALOX15BO15296 676 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 PRPSAP2O60256 369 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 ATP6V1B1P15313 513 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 GMPSP49915 693 aaPredicted RBP8.99□□□□□ -0.97
USP40-203ENST00000427112 DUOXA2Q1HG44 320 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 XKR3Q5GH77 459 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 FAM156AQ8NDB6 213 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 PIP4K2CQ8TBX8 421 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 DCAKDQ8WVC6 231 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 USP13Q92995 863 aaPredicted RBP8.99□□□□□ -0.97
USP40-203ENST00000427112 OXNAD1Q96HP4 312 aaPredicted RBP8.99□□□□□ -0.97
USP40-203ENST00000427112 LRMDAQ9H2I8 198 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 CCDC134Q9H6E4 229 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 ANKEF1Q9NU02 776 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 ARHGAP28Q9P2N2 729 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 STARD13Q9Y3M8 1113 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 SNX9Q9Y5X1 595 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 SRRM3A6NNA2 597 aaPredicted RBP8.99□□□□□ -0.97
USP40-203ENST00000427112 WDR46O15213 610 aaKnown RBP8.99□□□□□ -0.97
USP40-203ENST00000427112 ATP9BO43861 1147 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 SUPT20HL2P0C7V6 817 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 ERVK-10P10266 1014 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 UBA1P22314 1058 aaKnown RBP8.99□□□□□ -0.97
USP40-203ENST00000427112 CACNA2D1P54289 1103 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 KLC1Q07866 573 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 NME3Q13232 169 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 OASLQ15646 514 aaKnown RBP8.99□□□□□ -0.97
USP40-203ENST00000427112 NFIL3Q16649 462 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 SUPT20HL1Q3ZLR7 823 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 MAP1SQ66K74 1059 aaPredicted RBP8.99□□□□□ -0.97
USP40-203ENST00000427112 ZNF772Q68DY9 489 aaPredicted RBP8.99□□□□□ -0.97
USP40-203ENST00000427112 LRRC74BQ6ZQY2 392 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 RIPOR1Q6ZS17 1223 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 BBOF1Q8ND07 529 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 USP33Q8TEY7 942 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 NIF3L1Q9GZT8 377 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 ETNK2Q9NVF9 386 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 DNAJC16Q9Y2G8 782 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 RREB1Q92766 1687 aa8.99□□□□□ -0.97
USP40-203ENST00000427112 KLRG2A4D1S0 409 aaPredicted RBP8.98□□□□□ -0.97
USP40-203ENST00000427112 TPD52L2O43399 206 aaKnown RBP8.98□□□□□ -0.97
USP40-203ENST00000427112 MICAL2O94851 1124 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 ARIH2O95376 493 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 METTL18O95568 372 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 TNNC2P02585 160 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 IQCF3P0C7M6 154 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 SFNP31947 248 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 LAMTOR4Q0VGL1 99 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 AP1B1Q10567 949 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 TRAF1Q13077 416 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 MORF4L2Q15014 288 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 PPP1R15BQ5SWA1 713 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 JADE1Q6IE81 842 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 TRNP1Q6NT89 227 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 GALNT4Q8N4A0 578 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 PPFIBP2Q8ND30 876 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 SMC1BQ8NDV3 1235 aa8.98□□□□□ -0.97
USP40-203ENST00000427112 ZNF483Q8TF39 744 aaPredicted RBP8.98□□□□□ -0.97
USP40-203ENST00000427112 EMID1Q96A84 441 aaPredicted RBP8.98□□□□□ -0.97
USP40-203ENST00000427112 DNAJC1Q96KC8 554 aaKnown RBP8.98□□□□□ -0.97
USP40-203ENST00000427112 CGRRF1Q99675 332 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms