RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 MTM1Q13496 603 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 PPP2R5AQ15172 486 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 BMT2Q1RMZ1 405 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 SLC4A8Q2Y0W8 1093 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 BMP2KLQ5H9B9 411 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 MIIPQ5JXC2 388 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 TMEM240Q5SV17 173 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 ATXN7L2Q5T6C5 722 aaPredicted RBP2.89□□□□□ -1.95
VPS13A-208ENST00000423463 EFCAB12Q6NXP0 572 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 CRIP3Q6Q6R5 217 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 CWC27Q6UX04 472 aaKnown RBP2.89□□□□□ -1.95
VPS13A-208ENST00000423463 GADL1Q6ZQY3 521 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 MED25Q71SY5 747 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 GPRIN1Q7Z2K8 1008 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 ZNF276Q8N554 614 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 FAM193BQ96PV7 902 aaPredicted RBP2.89□□□□□ -1.95
VPS13A-208ENST00000423463 MMRN2Q9H8L6 949 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 PARPBPQ9NWS1 579 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 ING1Q9UK53 422 aaPredicted RBP2.89□□□□□ -1.95
VPS13A-208ENST00000423463 AGTPBP1Q9UPW5 1226 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 PCDHB1Q9Y5F3 818 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 ZMYM6O95789 1325 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 RAD50Q92878 1312 aa2.89□□□□□ -1.95
VPS13A-208ENST00000423463 CDHR4A6H8M9 788 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 MPHOSPH10O00566 681 aaKnown RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 KIAA0391O15091 583 aaKnown RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 ORC4O43929 436 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 TLR2O60603 784 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 RFPL1O75677 317 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 SBK3P0C264 359 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 AKR1B1P15121 316 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 RECQLP46063 649 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 GCLCP48506 637 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 SLC16A1P53985 500 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 HMGCS2P54868 508 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 SP3Q02447 781 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 RRP12Q5JTH9 1297 aaKnown RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 VPS53Q5VIR6 699 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 ZNF589Q86UQ0 364 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 SLC44A5Q8NCS7 719 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 HDAC10Q969S8 669 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 ERO1AQ96HE7 468 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 C12orf42Q96LP6 360 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 PARK7Q99497 189 aaKnown RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 ZSWIM1Q9BR11 485 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 R3HDMLQ9H3Y0 253 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 RNF41Q9H4P4 317 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 SH2D4AQ9H788 454 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 ZIM2Q9NZV7 527 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 NYAP2Q9P242 653 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 DDX52Q9Y2R4 599 aaKnown RBP eCLIP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 TMX2Q9Y320 296 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 THSD7BQ9C0I4 1608 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 ROBO3Q96MS0 1386 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 MYO5AQ9Y4I1 1855 aaKnown RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 IGKV6D-41A0A0C4DH26 115 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 SMIM22K7EJ46 135 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 ZNF213O14771 459 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 NARSO43776 548 aaKnown RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 LPXNO60711 386 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 IL33O95760 270 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 SCGB1D2O95969 90 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 EEF2P13639 858 aaKnown RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 ZFP36P26651 326 aaKnown RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 TFAP4Q01664 338 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 ICA1Q05084 483 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 KIF22Q14807 665 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 PKN2Q16513 984 aaKnown RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 PDCD4Q53EL6 469 aaKnown RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 AKNAD1Q5T1N1 836 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 NAIF1Q69YI7 327 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 NXNQ6DKJ4 435 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 C17orf99Q6UX52 265 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 MFSD6Q6ZSS7 791 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 GDF7Q7Z4P5 450 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 CTU1Q7Z7A3 348 aaKnown RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 RSPH3Q86UC2 560 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 MIER2Q8N344 545 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 ACER1Q8TDN7 264 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 SLC25A43Q8WUT9 341 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 LPAR1Q92633 364 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 CLIP3Q96DZ5 547 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 C8orf48Q96LL4 319 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 VRK1Q99986 396 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 NDC1Q9BTX1 674 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 MLST8Q9BVC4 326 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 RHOBTB2Q9BYZ6 727 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 HOXC10Q9NYD6 342 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 MOCS1Q9NZB8 636 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 GPRC5BQ9NZH0 403 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 FRMD4AQ9P2Q2 1039 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-208ENST00000423463 USP25Q9UHP3 1055 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 CHST2Q9Y4C5 530 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 AK9Q5TCS8 1911 aa2.88□□□□□ -1.95
VPS13A-208ENST00000423463 A0A1W2PRG0 241 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 CCDC78A2IDD5 438 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 TSPY2A6NKD2 308 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 DRGXA6NNA5 263 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 PRDM1O75626 825 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 TSPY3P0CV98 308 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms