RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 SLC6A17Q9H1V8 727 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 TNMDQ9H2S6 317 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 SMYD3Q9H7B4 428 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 CCSER2Q9H7U1 834 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 ARHGEF4Q9NR80 690 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 HSPBP1Q9NZL4 362 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 BCCIPQ9P287 314 aaKnown RBP eCLIP13.72□□□□□ -0.21
LINC00339-202ENST00000416769 PCDHB13Q9Y5F0 798 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 DMXL2Q8TDJ6 3036 aa13.72□□□□□ -0.21
LINC00339-202ENST00000416769 SRRM3A6NNA2 597 aaPredicted RBP13.71□□□□□ -0.21
LINC00339-202ENST00000416769 CLIC2O15247 247 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 TGFB1I1O43294 461 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 TNNC2P02585 160 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 IRF1P10914 325 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 ADH5P11766 374 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 CSRP1P21291 193 aaKnown RBP13.71□□□□□ -0.21
LINC00339-202ENST00000416769 ANXA13P27216 316 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 CASP4P49662 377 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 CDH8P55286 799 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 NOP14P78316 857 aaKnown RBP13.71□□□□□ -0.21
LINC00339-202ENST00000416769 MRPS21P82921 87 aaKnown RBP13.71□□□□□ -0.21
LINC00339-202ENST00000416769 MYO1EQ12965 1108 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 ORC1Q13415 861 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 BBS7Q8IWZ6 715 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 PLEKHO2Q8TD55 490 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 CCDC127Q96BQ5 260 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 P2RY11Q96G91 374 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 PAGE5Q96GU1 130 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 C8orf48Q96LL4 319 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 ACOX2Q99424 681 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 C7orf25Q9BPX7 421 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 SDCBP2Q9H190 292 aa13.71□□□□□ -0.21
LINC00339-202ENST00000416769 CHORDC1Q9UHD1 332 aaPredicted RBP13.71□□□□□ -0.21
LINC00339-202ENST00000416769 ZNF233A6NK53 670 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 TRIM66O15016 1216 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 MAP3K13O43283 966 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 APODP05090 189 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 CFIP05156 583 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 MYL1P05976 194 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 CEACAM1P13688 526 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 PTPN1P18031 435 aaKnown RBP13.7□□□□□ -0.22
LINC00339-202ENST00000416769 GABRG2P18507 467 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 GNL1P36915 607 aaPredicted RBP13.7□□□□□ -0.22
LINC00339-202ENST00000416769 CYP2J2P51589 502 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 MYL6P60660 151 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 DUOXA2Q1HG44 320 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 CNNM4Q6P4Q7 775 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 PAQR9Q6ZVX9 377 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 LPCAT2Q7L5N7 544 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 DPH6Q7L8W6 267 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 TMEM25Q86YD3 366 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 WDR49Q8IV35 697 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 NELFCDQ8IXH7 590 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 ETFBKMTQ8IXQ9 262 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 PGBD3Q8N328 593 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 WHAMMQ8TF30 809 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 ZCCHC14Q8WYQ9 949 aaKnown RBP13.7□□□□□ -0.22
LINC00339-202ENST00000416769 EXOC4Q96A65 974 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 GTPBP2Q9BX10 602 aaKnown RBP13.7□□□□□ -0.22
LINC00339-202ENST00000416769 SNX25Q9H3E2 840 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 GMIPQ9P107 970 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 CALCOCO1Q9P1Z2 691 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 NXF1Q9UBU9 619 aaKnown RBP13.7□□□□□ -0.22
LINC00339-202ENST00000416769 EVLQ9UI08 416 aaPredicted RBP13.7□□□□□ -0.22
LINC00339-202ENST00000416769 HOOK1Q9UJC3 728 aaKnown RBP13.7□□□□□ -0.22
LINC00339-202ENST00000416769 PILRBQ9UKJ0 227 aa13.7□□□□□ -0.22
LINC00339-202ENST00000416769 KNL1Q8NG31 2342 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 TNFRSF10BO14763 440 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 TULP3O75386 442 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 BEST1O76090 585 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 AFMP43652 599 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 SIM1P81133 766 aaPredicted RBP13.69□□□□□ -0.22
LINC00339-202ENST00000416769 SNRNP35Q16560 246 aaKnown RBP13.69□□□□□ -0.22
LINC00339-202ENST00000416769 KLHL40Q2TBA0 621 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 WDR72Q3MJ13 1102 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 LYSMD4Q5XG99 296 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 EGFLAMQ63HQ2 1017 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 SCARA5Q6ZMJ2 495 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 EPM2AIP1Q7L775 607 aaPredicted RBP13.69□□□□□ -0.22
LINC00339-202ENST00000416769 PIP4P1Q86T03 277 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 SYT12Q8IV01 421 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 SLC41A1Q8IVJ1 513 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 FBXO32Q969P5 355 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 CAMK1GQ96NX5 476 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 XYLT2Q9H1B5 865 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 AGPAT3Q9NRZ7 376 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 HMGXB4Q9UGU5 601 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 RAD54BQ9Y620 910 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 MYH10P35580 1976 aa13.69□□□□□ -0.22
LINC00339-202ENST00000416769 DSPP15924 2871 aaKnown RBP13.69□□□□□ -0.22
LINC00339-202ENST00000416769 FREM2Q5SZK8 3169 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 A0A0A0MRY4 1105 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.68□□□□□ -0.22
LINC00339-202ENST00000416769 A0A1W2PQF6 199 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 A8MXQ7 604 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 TAF4O00268 1085 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 TACC1O75410 805 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 ALDH1A2O94788 518 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 TBX18O95935 607 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 ADH1CP00326 375 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms