RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 MFSD1Q9H3U5 465 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 ARHGEF3Q9NR81 526 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 DNMT3LQ9UJW3 386 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 STRIP2Q9ULQ0 834 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 PTPRDP23468 1912 aa15.39■□□□□ 0.05
LIMS1-206ENST00000414829 TMEM221A6NGB7 291 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 PRR33A8MZF0 331 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 M0R296 226 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 COCHO43405 550 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 GDI1P31150 447 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 GPD2P43304 727 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 MLLT6P55198 1093 aaPredicted RBP15.38■□□□□ 0.05
LIMS1-206ENST00000414829 JAM2P57087 298 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 YWHAGP61981 247 aaKnown RBP eCLIP15.38■□□□□ 0.05
LIMS1-206ENST00000414829 AMPD2Q01433 879 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 GRM2Q14416 872 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 MTF1Q14872 753 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 FIGNQ5HY92 759 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 TRIM72Q6ZMU5 477 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 RSRC2Q7L4I2 434 aaKnown RBP15.38■□□□□ 0.05
LIMS1-206ENST00000414829 SLC47A2Q86VL8 602 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 TMEM35BQ8NCS4 154 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 SH3RF2Q8TEC5 729 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 ZSWIM1Q9BR11 485 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 ULBP1Q9BZM6 244 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 EDEM3Q9BZQ6 932 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 NUCKS1Q9H1E3 243 aaKnown RBP15.38■□□□□ 0.05
LIMS1-206ENST00000414829 NLRC4Q9NPP4 1024 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 ST7Q9NRC1 585 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 TBC1D14Q9P2M4 693 aa15.38■□□□□ 0.05
LIMS1-206ENST00000414829 CHORDC1Q9UHD1 332 aaPredicted RBP15.38■□□□□ 0.05
LIMS1-206ENST00000414829 AJAP1Q9UKB5 411 aaPredicted RBP15.38■□□□□ 0.05
LIMS1-206ENST00000414829 DOCK8Q8NF50 2099 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 CUL9Q8IWT3 2517 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 A0A1W2PQH9 124 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 GPR37L1O60883 481 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 CFHP08603 1231 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 RARGP13631 454 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 FERP16591 822 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 CLCN1P35523 988 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 IFNAR2P48551 515 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 RPL34P49207 117 aaKnown RBP15.37■□□□□ 0.05
LIMS1-206ENST00000414829 GPC5P78333 572 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 PDCLQ13371 301 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 ZNF77Q15935 545 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 C10orf120Q5SQS8 335 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 PMF1Q6P1K2 205 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 BMP8AQ7Z5Y6 402 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 ZDHHC17Q8IUH5 632 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 SUGP1Q8IWZ8 645 aaKnown RBP15.37■□□□□ 0.05
LIMS1-206ENST00000414829 ZNF397Q8NF99 534 aaPredicted RBP15.37■□□□□ 0.05
LIMS1-206ENST00000414829 EPS8L1Q8TE68 723 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 RNF139Q8WU17 664 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 ATP2A3Q93084 1043 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 OTUB2Q96DC9 234 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 RPP25Q9BUL9 199 aaKnown RBP15.37■□□□□ 0.05
LIMS1-206ENST00000414829 SYNCQ9H7C4 482 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 C8orf33Q9H7E9 229 aaPredicted RBP15.37■□□□□ 0.05
LIMS1-206ENST00000414829 ABCC13Q9NSE7 274 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.37■□□□□ 0.05
LIMS1-206ENST00000414829 LSM7Q9UK45 103 aaKnown RBP15.37■□□□□ 0.05
LIMS1-206ENST00000414829 MRPS17Q9Y2R5 130 aaKnown RBP15.37■□□□□ 0.05
LIMS1-206ENST00000414829 CPQQ9Y646 472 aa15.37■□□□□ 0.05
LIMS1-206ENST00000414829 NOTCH4Q99466 2003 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 E2F8A0AVK6 867 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 MAN2B1O00754 1011 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 NARSO43776 548 aaKnown RBP15.36■□□□□ 0.05
LIMS1-206ENST00000414829 GFPT2O94808 682 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 LCP1P13796 627 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 RGS7P49802 495 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 KLK7P49862 253 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 KPNA1P52294 538 aaPredicted RBP15.36■□□□□ 0.05
LIMS1-206ENST00000414829 DAOAP59103 153 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 COG7P83436 770 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 NR1I3Q14994 352 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 MLF2Q15773 248 aaPredicted RBP15.36■□□□□ 0.05
LIMS1-206ENST00000414829 BTBD8Q5XKL5 378 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 PPP1R2P3Q6NXS1 205 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 DENND1BQ6P3S1 775 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 POTEHQ6S545 545 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 TOGARAM2Q6ZUX3 1019 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 BEND5Q7L4P6 421 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 TMEM110Q86TL2 294 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 SIX5Q8N196 739 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 CPA6Q8N4T0 437 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 KHSRPQ92945 711 aaKnown RBP eCLIP15.36■□□□□ 0.05
LIMS1-206ENST00000414829 ASIC4Q96FT7 647 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 SLC4A5Q9BY07 1137 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 SMG9Q9H0W8 520 aaKnown RBP15.36■□□□□ 0.05
LIMS1-206ENST00000414829 EPHX3Q9H6B9 360 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 TMEM51Q9NW97 253 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 SH3BP1Q9Y3L3 701 aa15.36■□□□□ 0.05
LIMS1-206ENST00000414829 LEFTY2O00292 366 aa15.35■□□□□ 0.05
LIMS1-206ENST00000414829 TULP2O00295 520 aa15.35■□□□□ 0.05
LIMS1-206ENST00000414829 EPHB6O15197 1021 aa15.35■□□□□ 0.05
LIMS1-206ENST00000414829 TEX33O43247 280 aa15.35■□□□□ 0.05
LIMS1-206ENST00000414829 NFATC1O95644 943 aa15.35■□□□□ 0.05
LIMS1-206ENST00000414829 GLI1P08151 1106 aa15.35■□□□□ 0.05
LIMS1-206ENST00000414829 PNMA6AP0CW24 399 aaPredicted RBP15.35■□□□□ 0.05
LIMS1-206ENST00000414829 CDH5P33151 784 aaPredicted RBP15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms